Gene : Glyma.08G105900 G. max Wm82.a2.v1
Defline:  (1 of 3) KOG1781 - Small Nuclear ribonucleoprotein splicing factor Genomic Order:  1059
Name:  ? Glyma.08G105900 Secondary Identifier:  ? PAC:30537776
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G105900 0.5kb upstream 0.5kb upstream 3735 true Chr08: 8182656-8186390 Glycine max
Glyma.08G105900 0.5kb upstream 0.5kb upstream 500 false Chr08: 8185891-8186390 Glycine max
Glyma.08G105900 0.5kb downstream 0.5kb downstream 3735 true Chr08: 8182156-8185890 Glycine max
Glyma.08G105900 0.5kb downstream 0.5kb downstream 500 false Chr08: 8182156-8182655 Glycine max
Glyma.08G105900 1.0kb upstream 1.0kb upstream 4235 true Chr08: 8182656-8186890 Glycine max
Glyma.08G105900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 8185891-8186890 Glycine max
Glyma.08G105900 1.0kb downstream 1.0kb downstream 4235 true Chr08: 8181656-8185890 Glycine max
Glyma.08G105900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 8181656-8182655 Glycine max
Glyma.08G105900 2.0kb upstream 2.0kb upstream 5235 true Chr08: 8182656-8187890 Glycine max
Glyma.08G105900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 8185891-8187890 Glycine max
Glyma.08G105900 2.0kb downstream 2.0kb downstream 5235 true Chr08: 8180656-8185890 Glycine max
Glyma.08G105900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 8180656-8182655 Glycine max
Glyma.08G105900 5.0kb upstream 5.0kb upstream 8235 true Chr08: 8182656-8190890 Glycine max
Glyma.08G105900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 8185891-8190890 Glycine max
Glyma.08G105900 5.0kb downstream 5.0kb downstream 8235 true Chr08: 8177656-8185890 Glycine max
Glyma.08G105900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 8177656-8182655 Glycine max
Glyma.08G105900 10.0kb upstream 10.0kb upstream 13235 true Chr08: 8182656-8195890 Glycine max
Glyma.08G105900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 8185891-8195890 Glycine max
Glyma.08G105900 10.0kb downstream 10.0kb downstream 13235 true Chr08: 8172656-8185890 Glycine max
Glyma.08G105900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 8172656-8182655 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306096 5265 Fabidae View MSA
124062559 5270 Rosid View MSA
123737808 5271 Pentapetalae View MSA
122791526 5272 Eudicot View MSA
122051368 5273 Angiosperm View MSA
121349484 5274 Embryophyte View MSA
123423999 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.4773 0.0 83.0299 High Low
cufflinks 45.3671 0.0 121.301 High  
cufflinks 26.8062 0.0 73.362 High Low
cufflinks 33.0117 0.0 89.3305 High  
cufflinks 52.313 0.0 139.612 High  
cufflinks 54.4017 0.0 145.151 High High
cufflinks 54.1505 0.0 144.501 High  
cufflinks 48.4945 0.0 129.502 High  
cufflinks 41.1914 0.0 110.397 High  
cufflinks 4.81        
cufflinks 4.236        
cufflinks 4.024        
cufflinks 10.31     High High
cufflinks 13.01     High High
cufflinks 4.196        
cufflinks 6.063        
cufflinks 3.403       Low
cufflinks 4.954        
cufflinks 6.157        
cufflinks 5.933        
cufflinks 4.656        
cufflinks 6.057        
cufflinks 5.683        
cufflinks 4.826        
cufflinks 6.356        
cufflinks 4.68        

0 Strain