Gene : Glyma.08G098100 G. max Wm82.a2.v1
Defline:  (1 of 57) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  981
Name:  ? Glyma.08G098100 Secondary Identifier:  ? PAC:30536475
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G098100 0.5kb upstream 0.5kb upstream 4679 true Chr08: 7516136-7520814 Glycine max
Glyma.08G098100 0.5kb upstream 0.5kb upstream 500 false Chr08: 7520315-7520814 Glycine max
Glyma.08G098100 0.5kb downstream 0.5kb downstream 4679 true Chr08: 7515636-7520314 Glycine max
Glyma.08G098100 0.5kb downstream 0.5kb downstream 500 false Chr08: 7515636-7516135 Glycine max
Glyma.08G098100 1.0kb upstream 1.0kb upstream 5179 true Chr08: 7516136-7521314 Glycine max
Glyma.08G098100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 7520315-7521314 Glycine max
Glyma.08G098100 1.0kb downstream 1.0kb downstream 5179 true Chr08: 7515136-7520314 Glycine max
Glyma.08G098100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 7515136-7516135 Glycine max
Glyma.08G098100 2.0kb upstream 2.0kb upstream 6179 true Chr08: 7516136-7522314 Glycine max
Glyma.08G098100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 7520315-7522314 Glycine max
Glyma.08G098100 2.0kb downstream 2.0kb downstream 6179 true Chr08: 7514136-7520314 Glycine max
Glyma.08G098100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 7514136-7516135 Glycine max
Glyma.08G098100 5.0kb upstream 5.0kb upstream 9179 true Chr08: 7516136-7525314 Glycine max
Glyma.08G098100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 7520315-7525314 Glycine max
Glyma.08G098100 5.0kb downstream 5.0kb downstream 9179 true Chr08: 7511136-7520314 Glycine max
Glyma.08G098100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 7511136-7516135 Glycine max
Glyma.08G098100 10.0kb upstream 10.0kb upstream 14179 true Chr08: 7516136-7530314 Glycine max
Glyma.08G098100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 7520315-7530314 Glycine max
Glyma.08G098100 10.0kb downstream 10.0kb downstream 14179 true Chr08: 7506136-7520314 Glycine max
Glyma.08G098100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 7506136-7516135 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304903 5265 Fabidae View MSA
124067388 5270 Rosid View MSA
123740629 5271 Pentapetalae View MSA
122786381 5272 Eudicot View MSA
122046453 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310608 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.61135 0.0 23.3948    
cufflinks 7.3286 0.0 25.7526    
cufflinks 4.52268 0.0 16.4532    
cufflinks 6.50706 0.0 22.7266    
cufflinks 6.001 0.0 21.2917    
cufflinks 1.72349 0.0 7.10332   Low
cufflinks 6.91076 0.0 24.3337    
cufflinks 5.40662 0.0 19.2279    
cufflinks 5.88339 0.0 20.9388    
cufflinks 2.113        
cufflinks 0.728       Low
cufflinks 4.747        
cufflinks 2.758        
cufflinks 4.218        
cufflinks 2.135        
cufflinks 3.475        
cufflinks 1.631        
cufflinks 6.088       High
cufflinks 5.022       High
cufflinks 3.276        
cufflinks 1.001       Low
cufflinks 3.51        
cufflinks 4.311        
cufflinks 0.695       Low
cufflinks 3.621        
cufflinks 1.303        

0 Strain