Gene : Glyma.08G129400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31747:SF3 - PROTEIN LSD1 Genomic Order:  1294
Name:  ? Glyma.08G129400 Secondary Identifier:  ? PAC:30538970
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G129400 0.5kb upstream 0.5kb upstream 5302 true Chr08: 9961315-9966616 Glycine max
Glyma.08G129400 0.5kb upstream 0.5kb upstream 500 false Chr08: 9961315-9961814 Glycine max
Glyma.08G129400 0.5kb downstream 0.5kb downstream 5302 true Chr08: 9961815-9967116 Glycine max
Glyma.08G129400 0.5kb downstream 0.5kb downstream 500 false Chr08: 9966617-9967116 Glycine max
Glyma.08G129400 1.0kb upstream 1.0kb upstream 5802 true Chr08: 9960815-9966616 Glycine max
Glyma.08G129400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 9960815-9961814 Glycine max
Glyma.08G129400 1.0kb downstream 1.0kb downstream 5802 true Chr08: 9961815-9967616 Glycine max
Glyma.08G129400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 9966617-9967616 Glycine max
Glyma.08G129400 2.0kb upstream 2.0kb upstream 6802 true Chr08: 9959815-9966616 Glycine max
Glyma.08G129400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 9959815-9961814 Glycine max
Glyma.08G129400 2.0kb downstream 2.0kb downstream 6802 true Chr08: 9961815-9968616 Glycine max
Glyma.08G129400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 9966617-9968616 Glycine max
Glyma.08G129400 5.0kb upstream 5.0kb upstream 9802 true Chr08: 9956815-9966616 Glycine max
Glyma.08G129400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 9956815-9961814 Glycine max
Glyma.08G129400 5.0kb downstream 5.0kb downstream 9802 true Chr08: 9961815-9971616 Glycine max
Glyma.08G129400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 9966617-9971616 Glycine max
Glyma.08G129400 10.0kb upstream 10.0kb upstream 14802 true Chr08: 9951815-9966616 Glycine max
Glyma.08G129400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 9951815-9961814 Glycine max
Glyma.08G129400 10.0kb downstream 10.0kb downstream 14802 true Chr08: 9961815-9976616 Glycine max
Glyma.08G129400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 9966617-9976616 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304493 5265 Fabidae View MSA
124064125 5270 Rosid View MSA
123749218 5271 Pentapetalae View MSA
122793241 5272 Eudicot View MSA
122043941 5273 Angiosperm View MSA
121347680 5274 Embryophyte View MSA
123425652 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.7038 0.0 39.9471    
cufflinks 12.1553 0.0 33.4299   Low
cufflinks 29.7119 0.0 79.3525 High  
cufflinks 18.0808 0.0 48.6033    
cufflinks 33.919 0.0 90.7244 High High
cufflinks 27.144 0.0 72.4197 High  
cufflinks 11.4384 0.0 31.6707   Low
cufflinks 14.9432 0.0 40.5268    
cufflinks 45.6407 0.0 123.739 High High
cufflinks 4.448        
cufflinks 14.637     High High
cufflinks 7.184        
cufflinks 4.376        
cufflinks 4.773        
cufflinks 36.506     High High
cufflinks 5.754        
cufflinks 5.174        
cufflinks 7.397     High  
cufflinks 5.109        
cufflinks 7.139     High  
cufflinks 10.473     High  
cufflinks 6.575        
cufflinks 3.917       Low
cufflinks 15.103     High High
cufflinks 6.767        
cufflinks 10.233     High  

0 Strain