Gene : Glyma.08G172600 G. max Wm82.a2.v1
Defline:  (1 of 28) PF03101//PF04434//PF10551 - FAR1 DNA-binding domain (FAR1) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  1726
Name:  ? Glyma.08G172600 Secondary Identifier:  ? PAC:30540331
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G172600 0.5kb upstream 0.5kb upstream 4978 true Chr08: 13730192-13735169 Glycine max
Glyma.08G172600 0.5kb upstream 0.5kb upstream 500 false Chr08: 13734670-13735169 Glycine max
Glyma.08G172600 0.5kb downstream 0.5kb downstream 4978 true Chr08: 13729692-13734669 Glycine max
Glyma.08G172600 0.5kb downstream 0.5kb downstream 500 false Chr08: 13729692-13730191 Glycine max
Glyma.08G172600 1.0kb upstream 1.0kb upstream 5478 true Chr08: 13730192-13735669 Glycine max
Glyma.08G172600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 13734670-13735669 Glycine max
Glyma.08G172600 1.0kb downstream 1.0kb downstream 5478 true Chr08: 13729192-13734669 Glycine max
Glyma.08G172600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 13729192-13730191 Glycine max
Glyma.08G172600 2.0kb upstream 2.0kb upstream 6478 true Chr08: 13730192-13736669 Glycine max
Glyma.08G172600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 13734670-13736669 Glycine max
Glyma.08G172600 2.0kb downstream 2.0kb downstream 6478 true Chr08: 13728192-13734669 Glycine max
Glyma.08G172600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 13728192-13730191 Glycine max
Glyma.08G172600 5.0kb upstream 5.0kb upstream 9478 true Chr08: 13730192-13739669 Glycine max
Glyma.08G172600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 13734670-13739669 Glycine max
Glyma.08G172600 5.0kb downstream 5.0kb downstream 9478 true Chr08: 13725192-13734669 Glycine max
Glyma.08G172600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 13725192-13730191 Glycine max
Glyma.08G172600 10.0kb upstream 10.0kb upstream 14478 true Chr08: 13730192-13744669 Glycine max
Glyma.08G172600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 13734670-13744669 Glycine max
Glyma.08G172600 10.0kb downstream 10.0kb downstream 14478 true Chr08: 13720192-13734669 Glycine max
Glyma.08G172600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 13720192-13730191 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248565 5265 Fabidae Singleton cluster - no MSA
123992141 5270 Rosid Singleton cluster - no MSA
123745774 5271 Pentapetalae View MSA
122796593 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.5635 0.0 13.796    
cufflinks 4.578 0.0 16.6466   High
cufflinks 4.16937 0.0 15.2936    
cufflinks 3.63827 0.0 13.8377    
cufflinks 2.50571 0.0 10.6343   Low
cufflinks 1.99454 0.0 9.11849   Low
cufflinks 4.55705 0.0 16.778   High
cufflinks 3.46787 0.0 13.4772    
cufflinks 2.92711 0.0 10.1106    
cufflinks 0.948        
cufflinks 0.792        
cufflinks 1.923        
cufflinks 0.982        
cufflinks 1.212        
cufflinks 0.785        
cufflinks 1.375        
cufflinks 0.284       Low
cufflinks 2.648       High
cufflinks 1.796        
cufflinks 1.725        
cufflinks 0.607       Low
cufflinks 1.764        
cufflinks 1.471        
cufflinks 0.801        
cufflinks 1.624        
cufflinks 0.559       Low

0 Strain