Gene : Glyma.08G173000 G. max Wm82.a2.v1
Defline:  (1 of 2) PF14712 - Snapin/Pallidin (Snapin_Pallidin) Genomic Order:  1730
Name:  ? Glyma.08G173000 Secondary Identifier:  ? PAC:30538740
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G173000 0.5kb upstream 0.5kb upstream 6663 true Chr08: 13755159-13761821 Glycine max
Glyma.08G173000 0.5kb upstream 0.5kb upstream 500 false Chr08: 13755159-13755658 Glycine max
Glyma.08G173000 0.5kb downstream 0.5kb downstream 6663 true Chr08: 13755659-13762321 Glycine max
Glyma.08G173000 0.5kb downstream 0.5kb downstream 500 false Chr08: 13761822-13762321 Glycine max
Glyma.08G173000 1.0kb upstream 1.0kb upstream 7163 true Chr08: 13754659-13761821 Glycine max
Glyma.08G173000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 13754659-13755658 Glycine max
Glyma.08G173000 1.0kb downstream 1.0kb downstream 7163 true Chr08: 13755659-13762821 Glycine max
Glyma.08G173000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 13761822-13762821 Glycine max
Glyma.08G173000 2.0kb upstream 2.0kb upstream 8163 true Chr08: 13753659-13761821 Glycine max
Glyma.08G173000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 13753659-13755658 Glycine max
Glyma.08G173000 2.0kb downstream 2.0kb downstream 8163 true Chr08: 13755659-13763821 Glycine max
Glyma.08G173000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 13761822-13763821 Glycine max
Glyma.08G173000 5.0kb upstream 5.0kb upstream 11163 true Chr08: 13750659-13761821 Glycine max
Glyma.08G173000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 13750659-13755658 Glycine max
Glyma.08G173000 5.0kb downstream 5.0kb downstream 11163 true Chr08: 13755659-13766821 Glycine max
Glyma.08G173000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 13761822-13766821 Glycine max
Glyma.08G173000 10.0kb upstream 10.0kb upstream 16163 true Chr08: 13745659-13761821 Glycine max
Glyma.08G173000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 13745659-13755658 Glycine max
Glyma.08G173000 10.0kb downstream 10.0kb downstream 16163 true Chr08: 13755659-13771821 Glycine max
Glyma.08G173000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 13761822-13771821 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311204 5265 Fabidae View MSA
124063126 5270 Rosid View MSA
123737413 5271 Pentapetalae View MSA
122787592 5272 Eudicot View MSA
122048914 5273 Angiosperm View MSA
121348010 5274 Embryophyte View MSA
123425818 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.33628 0.0 41.9169    
cufflinks 6.95326 0.0 38.3537    
cufflinks 4.98836 0.0 24.2196   Low
cufflinks 6.14943 0.0 42.6435    
cufflinks 11.5432 0.0 50.9939   High
cufflinks 14.7267 0.0 51.0087   High
cufflinks 4.6927 0.0 28.4383   Low
cufflinks 9.91008 0.0 38.2927    
cufflinks 8.40142 0.0 41.831    
cufflinks 0.347       High
cufflinks 0.089       Low
cufflinks 0.187        
cufflinks 0.414       High
cufflinks 0.575       High
cufflinks 0.06       Low
cufflinks 0.193        
cufflinks 0.159        
cufflinks 0.263        
cufflinks 0.195        
cufflinks 0.239        
cufflinks 0.107        
cufflinks 0.234        
cufflinks 0.253        
cufflinks 0.085       Low
cufflinks 0.192        
cufflinks 0.132        

0 Strain