Gene : Glyma.08G159900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23118//PTHR23118:SF9 - ATP-CITRATE SYNTHASE Genomic Order:  1599
Name:  ? Glyma.08G159900 Secondary Identifier:  ? PAC:30540502
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5172 Glycine max pathologic  
Gmax PWY-5173 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G159900 0.5kb upstream 0.5kb upstream 5520 true Chr08: 12393959-12399478 Glycine max
Glyma.08G159900 0.5kb upstream 0.5kb upstream 500 false Chr08: 12393959-12394458 Glycine max
Glyma.08G159900 0.5kb downstream 0.5kb downstream 5520 true Chr08: 12394459-12399978 Glycine max
Glyma.08G159900 0.5kb downstream 0.5kb downstream 500 false Chr08: 12399479-12399978 Glycine max
Glyma.08G159900 1.0kb upstream 1.0kb upstream 6020 true Chr08: 12393459-12399478 Glycine max
Glyma.08G159900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 12393459-12394458 Glycine max
Glyma.08G159900 1.0kb downstream 1.0kb downstream 6020 true Chr08: 12394459-12400478 Glycine max
Glyma.08G159900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 12399479-12400478 Glycine max
Glyma.08G159900 2.0kb upstream 2.0kb upstream 7020 true Chr08: 12392459-12399478 Glycine max
Glyma.08G159900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 12392459-12394458 Glycine max
Glyma.08G159900 2.0kb downstream 2.0kb downstream 7020 true Chr08: 12394459-12401478 Glycine max
Glyma.08G159900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 12399479-12401478 Glycine max
Glyma.08G159900 5.0kb upstream 5.0kb upstream 10020 true Chr08: 12389459-12399478 Glycine max
Glyma.08G159900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 12389459-12394458 Glycine max
Glyma.08G159900 5.0kb downstream 5.0kb downstream 10020 true Chr08: 12394459-12404478 Glycine max
Glyma.08G159900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 12399479-12404478 Glycine max
Glyma.08G159900 10.0kb upstream 10.0kb upstream 15020 true Chr08: 12384459-12399478 Glycine max
Glyma.08G159900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 12384459-12394458 Glycine max
Glyma.08G159900 10.0kb downstream 10.0kb downstream 15020 true Chr08: 12394459-12409478 Glycine max
Glyma.08G159900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 12399479-12409478 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313163 5265 Fabidae View MSA
124066765 5270 Rosid View MSA
123744939 5271 Pentapetalae View MSA
122786148 5272 Eudicot View MSA
122042565 5273 Angiosperm View MSA
121348583 5274 Embryophyte View MSA
123428169 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.198896 0.0 0.964258 Low Low
cufflinks 21.2024 0.0 79.3897 High  
cufflinks 2.9167 0.0 14.1225    
cufflinks 18.9439 0.0 72.7417    
cufflinks 61.4456 0.0 250.666 High  
cufflinks 24.38 0.0 83.8252 High  
cufflinks 31.4342 0.0 124.601 High  
cufflinks 14.5617 0.0 54.4436    
cufflinks 47.7094 0.0 202.906 High  
cufflinks 4.299        
cufflinks 0.279       Low
cufflinks 1.866        
cufflinks 7.427     High High
cufflinks 11.869     High High
cufflinks 0.182       Low
cufflinks 2.08        
cufflinks 2.115        
cufflinks 2.677        
cufflinks 7.734     High High
cufflinks 0.547        
cufflinks 0.603        
cufflinks 0.829        
cufflinks 4.34        
cufflinks 0.218       Low
cufflinks 1.449        
cufflinks 1.037        

0 Strain