Gene : Glyma.08G199100 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1991
Name:  ? Glyma.08G199100 Secondary Identifier:  ? PAC:30538959
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G199100 0.5kb upstream 0.5kb upstream 2234 true Chr08: 16083749-16085982 Glycine max
Glyma.08G199100 0.5kb upstream 0.5kb upstream 500 false Chr08: 16085483-16085982 Glycine max
Glyma.08G199100 0.5kb downstream 0.5kb downstream 2234 true Chr08: 16083249-16085482 Glycine max
Glyma.08G199100 0.5kb downstream 0.5kb downstream 500 false Chr08: 16083249-16083748 Glycine max
Glyma.08G199100 1.0kb upstream 1.0kb upstream 2734 true Chr08: 16083749-16086482 Glycine max
Glyma.08G199100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 16085483-16086482 Glycine max
Glyma.08G199100 1.0kb downstream 1.0kb downstream 2734 true Chr08: 16082749-16085482 Glycine max
Glyma.08G199100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 16082749-16083748 Glycine max
Glyma.08G199100 2.0kb upstream 2.0kb upstream 3734 true Chr08: 16083749-16087482 Glycine max
Glyma.08G199100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 16085483-16087482 Glycine max
Glyma.08G199100 2.0kb downstream 2.0kb downstream 3734 true Chr08: 16081749-16085482 Glycine max
Glyma.08G199100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 16081749-16083748 Glycine max
Glyma.08G199100 5.0kb upstream 5.0kb upstream 6734 true Chr08: 16083749-16090482 Glycine max
Glyma.08G199100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 16085483-16090482 Glycine max
Glyma.08G199100 5.0kb downstream 5.0kb downstream 6734 true Chr08: 16078749-16085482 Glycine max
Glyma.08G199100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 16078749-16083748 Glycine max
Glyma.08G199100 10.0kb upstream 10.0kb upstream 11734 true Chr08: 16083749-16095482 Glycine max
Glyma.08G199100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 16085483-16095482 Glycine max
Glyma.08G199100 10.0kb downstream 10.0kb downstream 11734 true Chr08: 16073749-16085482 Glycine max
Glyma.08G199100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 16073749-16083748 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309091 5265 Fabidae View MSA
124073519 5270 Rosid View MSA
123739768 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.07929 0.0 12.6874   High
cufflinks 2.76632 0.0 9.07908    
cufflinks 3.52255 0.0 11.1688   High
cufflinks 1.96517 0.0 6.71992    
cufflinks 2.17498 0.0 7.34739    
cufflinks 1.423 0.0 5.01165   Low
cufflinks 2.15743 0.0 7.2893    
cufflinks 2.42769 0.0 8.0977    
cufflinks 1.8833 0.0 6.46476    
cufflinks 1.544       Low
cufflinks 2.287        
cufflinks 2.418        
cufflinks 1.84       Low
cufflinks 1.895       Low
cufflinks 3.852        
cufflinks 5.557       High
cufflinks 1.666       Low
cufflinks 2.173        
cufflinks 3.621        
cufflinks 5.285       High
cufflinks 3.16        
cufflinks 4.923       High
cufflinks 4.32        
cufflinks 2.559        
cufflinks 6.049       High
cufflinks 2.694        

0 Strain