Gene : Glyma.08G188000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12832 - TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 Genomic Order:  1880
Name:  ? Glyma.08G188000 Secondary Identifier:  ? PAC:30538138
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G188000 0.5kb upstream 0.5kb upstream 8226 true Chr08: 15072032-15080257 Glycine max
Glyma.08G188000 0.5kb upstream 0.5kb upstream 500 false Chr08: 15079758-15080257 Glycine max
Glyma.08G188000 0.5kb downstream 0.5kb downstream 8226 true Chr08: 15071532-15079757 Glycine max
Glyma.08G188000 0.5kb downstream 0.5kb downstream 500 false Chr08: 15071532-15072031 Glycine max
Glyma.08G188000 1.0kb upstream 1.0kb upstream 8726 true Chr08: 15072032-15080757 Glycine max
Glyma.08G188000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 15079758-15080757 Glycine max
Glyma.08G188000 1.0kb downstream 1.0kb downstream 8726 true Chr08: 15071032-15079757 Glycine max
Glyma.08G188000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 15071032-15072031 Glycine max
Glyma.08G188000 2.0kb upstream 2.0kb upstream 9726 true Chr08: 15072032-15081757 Glycine max
Glyma.08G188000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 15079758-15081757 Glycine max
Glyma.08G188000 2.0kb downstream 2.0kb downstream 9726 true Chr08: 15070032-15079757 Glycine max
Glyma.08G188000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 15070032-15072031 Glycine max
Glyma.08G188000 5.0kb upstream 5.0kb upstream 12726 true Chr08: 15072032-15084757 Glycine max
Glyma.08G188000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 15079758-15084757 Glycine max
Glyma.08G188000 5.0kb downstream 5.0kb downstream 12726 true Chr08: 15067032-15079757 Glycine max
Glyma.08G188000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 15067032-15072031 Glycine max
Glyma.08G188000 10.0kb upstream 10.0kb upstream 17726 true Chr08: 15072032-15089757 Glycine max
Glyma.08G188000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 15079758-15089757 Glycine max
Glyma.08G188000 10.0kb downstream 10.0kb downstream 17726 true Chr08: 15062032-15079757 Glycine max
Glyma.08G188000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 15062032-15072031 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308652 5265 Fabidae View MSA
124065811 5270 Rosid View MSA
123746081 5271 Pentapetalae View MSA
122792060 5272 Eudicot View MSA
122043242 5273 Angiosperm View MSA
121345323 5274 Embryophyte View MSA
123426758 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.8727 0.0 77.4559 High  
cufflinks 10.3461 0.0 28.0357    
cufflinks 127.739 0.0 577.852 High High
cufflinks 14.3299 0.0 39.846    
cufflinks 8.59258 0.0 23.0708    
cufflinks 37.286 0.0 119.03 High  
cufflinks 5.50186 0.0 14.688   Low
cufflinks 15.1135 0.0 42.262    
cufflinks 12.0344 0.0 32.9481    
cufflinks 16.88     High  
cufflinks 26.837     High  
cufflinks 59.016     High High
cufflinks 10.633     High  
cufflinks 6.462       Low
cufflinks 19.378     High  
cufflinks 11.373     High  
cufflinks 23.882     High  
cufflinks 22.696     High  
cufflinks 13.067     High  
cufflinks 8.817     High Low
cufflinks 12.406     High  
cufflinks 11.051     High  
cufflinks 13.195     High  
cufflinks 29.893     High High
cufflinks 12.072     High  
cufflinks 33.251     High High

0 Strain