Gene : Glyma.08G176400 G. max Wm82.a2.v1
Defline:  (1 of 4) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) Genomic Order:  1764
Name:  ? Glyma.08G176400 Secondary Identifier:  ? PAC:30540627
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G176400 0.5kb upstream 0.5kb upstream 7488 true Chr08: 14135082-14142569 Glycine max
Glyma.08G176400 0.5kb upstream 0.5kb upstream 500 false Chr08: 14135082-14135581 Glycine max
Glyma.08G176400 0.5kb downstream 0.5kb downstream 7488 true Chr08: 14135582-14143069 Glycine max
Glyma.08G176400 0.5kb downstream 0.5kb downstream 500 false Chr08: 14142570-14143069 Glycine max
Glyma.08G176400 1.0kb upstream 1.0kb upstream 7988 true Chr08: 14134582-14142569 Glycine max
Glyma.08G176400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 14134582-14135581 Glycine max
Glyma.08G176400 1.0kb downstream 1.0kb downstream 7988 true Chr08: 14135582-14143569 Glycine max
Glyma.08G176400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 14142570-14143569 Glycine max
Glyma.08G176400 2.0kb upstream 2.0kb upstream 8988 true Chr08: 14133582-14142569 Glycine max
Glyma.08G176400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 14133582-14135581 Glycine max
Glyma.08G176400 2.0kb downstream 2.0kb downstream 8988 true Chr08: 14135582-14144569 Glycine max
Glyma.08G176400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 14142570-14144569 Glycine max
Glyma.08G176400 5.0kb upstream 5.0kb upstream 11988 true Chr08: 14130582-14142569 Glycine max
Glyma.08G176400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 14130582-14135581 Glycine max
Glyma.08G176400 5.0kb downstream 5.0kb downstream 11988 true Chr08: 14135582-14147569 Glycine max
Glyma.08G176400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 14142570-14147569 Glycine max
Glyma.08G176400 10.0kb upstream 10.0kb upstream 16988 true Chr08: 14125582-14142569 Glycine max
Glyma.08G176400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 14125582-14135581 Glycine max
Glyma.08G176400 10.0kb downstream 10.0kb downstream 16988 true Chr08: 14135582-14152569 Glycine max
Glyma.08G176400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 14142570-14152569 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303526 5265 Fabidae View MSA
124064964 5270 Rosid View MSA
123740266 5271 Pentapetalae View MSA
122794524 5272 Eudicot View MSA
122049515 5273 Angiosperm View MSA
121344395 5274 Embryophyte View MSA
123428747 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.78293 0.0 29.8354   Low
cufflinks 16.1942 0.0 55.7414    
cufflinks 9.44413 0.0 34.431   Low
cufflinks 15.3003 0.0 52.8158    
cufflinks 13.7218 0.0 53.8914    
cufflinks 10.7735 0.0 38.5607    
cufflinks 27.1401 0.0 94.1703 High High
cufflinks 13.7308 0.0 53.6001    
cufflinks 19.5847 0.0 67.0919    
cufflinks 0.648        
cufflinks 0.173       Low
cufflinks 0.866        
cufflinks 0.939        
cufflinks 0.947        
cufflinks 0.484        
cufflinks 0.644        
cufflinks 0.344        
cufflinks 1.364       High
cufflinks 1.072       High
cufflinks 0.663        
cufflinks 0.214       Low
cufflinks 0.751        
cufflinks 0.784        
cufflinks 0.3       Low
cufflinks 0.604        
cufflinks 0.289       Low

0 Strain