Protein Family : CTC-interacting domain 9 122794524

Method ID:  5272 Method Name:  Eudicot
Sequence Alignment:  View MSA Member Count:  59

59 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29650.t000001 (1 of 1) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) R. communis v0.1 13019   29650: 34265-47283
Cucsa.071470 (1 of 1) PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) C. sativus v1.0 7835   scaffold00755: 13859-21693
orange1.1g022058m.g (1 of 1) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) C. sinensis v1.1 7307   scaffold00206: 264488-271794
AT3G14450 (1 of 4) PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) A. thaliana TAIR10 CID9 1814   Chr3: 4849788-4851601
AT1G53650 (1 of 1) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein A. thaliana TAIR10 CID8 2538   Chr1: 20029029-20031566
Thhalv10021108m.g (1 of 2) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) E. salsugineum v1.0 2434   scaffold_13: 4509935-4512368
Ciclev10021336m.g (1 of 1) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) C. clementina v1.0 7467   scaffold_3: 29395094-29402560
Gorai.002G038400 (1 of 5) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) G. raimondii v2.1 4437   Chr02: 3071440-3075876
Gorai.007G335300 (1 of 5) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) G. raimondii v2.1 4362   Chr07: 55967601-55971962
Thecc1EG032334 (1 of 1) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) T. cacao v1.1 5458   scaffold_7: 10177401-10182858
Migut.M00654 (1 of 1) PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) M. guttatus v2.0 4169   scaffold_13: 14159680-14163848
Araha.16722s0001 (1 of 1) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein A. halleri v1.1 2591   Scaffold16722: 9536-12126
Araha.22779s0004 (1 of 1) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) A. halleri v1.1 2651   Scaffold22779: 15990-18640
Cagra.9457s0004 (1 of 2) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein C. grandiflora v1.1 2632   Scaffold9457: 13874-16505
Cagra.12113s0005 (1 of 3) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) C. grandiflora v1.1 2044   Scaffold12113: 13930-15973
Glyma.08G176400 (1 of 4) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) G. max Wm82.a2.v1 6988   Chr08: 14135582-14142569
Glyma.15G249900 (1 of 4) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) G. max Wm82.a2.v1 6866   Chr15: 47665559-47672424
Brara.A03188 (1 of 4) PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) B. rapa FPsc v1.3 2534   A01: 26664351-26666884
Brara.E01541 (1 of 1) KOG0148//KOG4210 - Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) // Nuclear localization sequence binding protein B. rapa FPsc v1.3 2424   A05: 10123335-10125758
Brara.C03528 (1 of 3) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein B. rapa FPsc v1.3 2100   A03: 17955252-17957351
Bostr.28625s0253 (1 of 1) KOG0121//KOG0131//KOG4210 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein B. stricta v1.2 2629   Scaffold28625: 1317681-1320309
Bostr.0124s0160 (1 of 1) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein B. stricta v1.2 2482   Scaffold124: 955539-958020
Medtr2g070540 (1 of 3) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) M. truncatula Mt4.0v1 6136   chr2: 29723724-29729859
SapurV1A.0303s0010 (1 of 8) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) S. purpurea v1.0 7825   chr11: 9346432-9354256
SapurV1A.0020s0110 (1 of 8) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) S. purpurea v1.0 7142   chr16: 24416073-24423214
Eucgr.F03200 (1 of 3) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) E. grandis v2.0 6509   Chr06: 43817876-43824384
Prupe.4G149200 (1 of 1) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) P. persica v2.1 7514   Pp04: 8518373-8525886
Manes.15G102100 (1 of 1) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) M. esculenta v6.1 10628   Chromosome15: 7588970-7599597
Aqcoe1G189500 (1 of 1) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) A. coerulea v3.1 7735   Chr_01: 11095444-11103178
AL1G62320 (1 of 1) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) A. lyrata v2.1 2575   scaffold_1: 28716505-28719079

59 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
orange1.1g022058m C. sinensis v1.1 122794524 CTC-interacting domain 9 1 5272 Eudicot
Ciclev10021336m C. clementina v1.0 122794524 CTC-interacting domain 9 1 5272 Eudicot
Gorai.007G335300.1 G. raimondii v2.1 122794524 CTC-interacting domain 9 2 5272 Eudicot
Gorai.002G038400.1 G. raimondii v2.1 122794524 CTC-interacting domain 9 2 5272 Eudicot
Araha.22779s0004.1.p A. halleri v1.1 122794524 CTC-interacting domain 9 2 5272 Eudicot
Migut.M00654.1.p M. guttatus v2.0 122794524 CTC-interacting domain 9 1 5272 Eudicot
Glyma.15G249900.1.p G. max Wm82.a2.v1 122794524 CTC-interacting domain 9 2 5272 Eudicot
Glyma.08G176400.1.p G. max Wm82.a2.v1 122794524 CTC-interacting domain 9 2 5272 Eudicot
Brara.E01541.1.p B. rapa FPsc v1.3 122794524 CTC-interacting domain 9 3 5272 Eudicot
Bostr.0124s0160.1.p B. stricta v1.2 122794524 CTC-interacting domain 9 2 5272 Eudicot
Medtr2g070540.1 M. truncatula Mt4.0v1 122794524 CTC-interacting domain 9 1 5272 Eudicot
Eucgr.F03200.1.p E. grandis v2.0 122794524 CTC-interacting domain 9 1 5272 Eudicot
Aqcoe1G189500.1.p A. coerulea v3.1 122794524 CTC-interacting domain 9 1 5272 Eudicot
DCAR_019637 D. carota v2.0 122794524 CTC-interacting domain 9 3 5272 Eudicot
DCAR_017565 D. carota v2.0 122794524 CTC-interacting domain 9 3 5272 Eudicot
DCAR_021058 D. carota v2.0 122794524 CTC-interacting domain 9 3 5272 Eudicot
Solyc12g011340.1.1 S. lycopersicum ITAG2.4 122794524 CTC-interacting domain 9 2 5272 Eudicot
AUR62043090-RA C. quinoa v1.0 122794524 CTC-interacting domain 9 1 5272 Eudicot
Podel.11G092700.1.p P. deltoides WV94 v2.1 122794524 CTC-interacting domain 9 2 5272 Eudicot
PGSC0003DMP400048091 S. tuberosum v4.03 122794524 CTC-interacting domain 9 2 5272 Eudicot
Lsat_1_v5_gn_7_101481.1 L. sativa V8 122794524 CTC-interacting domain 9 2 5272 Eudicot
Carub.0001s4292.1.p C. rubella v1.1 122794524 CTC-interacting domain 9 2 5272 Eudicot
MD10G1194800 M. domestica v1.1 122794524 CTC-interacting domain 9 2 5272 Eudicot
Ca_25793 C. arietinum v1.0 122794524 CTC-interacting domain 9 1 5272 Eudicot
HanXRQChr12g0374371 H. annuus r1.2 122794524 CTC-interacting domain 9 3 5272 Eudicot
29650.m000268 R. communis v0.1 122794524 CTC-interacting domain 9 1 5272 Eudicot
Cucsa.071470.1 C. sativus v1.0 122794524 CTC-interacting domain 9 1 5272 Eudicot
AT3G14450.1 A. thaliana TAIR10 122794524 CTC-interacting domain 9 2 5272 Eudicot
AT1G53650.1 A. thaliana TAIR10 122794524 CTC-interacting domain 9 2 5272 Eudicot
Thhalv10021108m E. salsugineum v1.0 122794524 CTC-interacting domain 9 1 5272 Eudicot