Gene : Medtr2g070540 M. truncatula Mt4.0v1
Defline:  (1 of 3) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Description:  CTC-interacting domain protein
Genomic Order:  3729 Name:  ? Medtr2g070540
Secondary Identifier:  ? PAC:31068075
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g070540 0.5kb upstream 0.5kb upstream 6636 true chr2: 29723224-29729859 Medicago truncatula
Medtr2g070540 0.5kb upstream 0.5kb upstream 500 false chr2: 29723224-29723723 Medicago truncatula
Medtr2g070540 0.5kb downstream 0.5kb downstream 6636 true chr2: 29723724-29730359 Medicago truncatula
Medtr2g070540 0.5kb downstream 0.5kb downstream 500 false chr2: 29729860-29730359 Medicago truncatula
Medtr2g070540 1.0kb upstream 1.0kb upstream 7136 true chr2: 29722724-29729859 Medicago truncatula
Medtr2g070540 1.0kb upstream 1.0kb upstream 1000 false chr2: 29722724-29723723 Medicago truncatula
Medtr2g070540 1.0kb downstream 1.0kb downstream 7136 true chr2: 29723724-29730859 Medicago truncatula
Medtr2g070540 1.0kb downstream 1.0kb downstream 1000 false chr2: 29729860-29730859 Medicago truncatula
Medtr2g070540 2.0kb upstream 2.0kb upstream 8136 true chr2: 29721724-29729859 Medicago truncatula
Medtr2g070540 2.0kb upstream 2.0kb upstream 2000 false chr2: 29721724-29723723 Medicago truncatula
Medtr2g070540 2.0kb downstream 2.0kb downstream 8136 true chr2: 29723724-29731859 Medicago truncatula
Medtr2g070540 2.0kb downstream 2.0kb downstream 2000 false chr2: 29729860-29731859 Medicago truncatula
Medtr2g070540 5.0kb upstream 5.0kb upstream 11136 true chr2: 29718724-29729859 Medicago truncatula
Medtr2g070540 5.0kb upstream 5.0kb upstream 5000 false chr2: 29718724-29723723 Medicago truncatula
Medtr2g070540 5.0kb downstream 5.0kb downstream 11136 true chr2: 29723724-29734859 Medicago truncatula
Medtr2g070540 5.0kb downstream 5.0kb downstream 5000 false chr2: 29729860-29734859 Medicago truncatula
Medtr2g070540 10.0kb upstream 10.0kb upstream 16136 true chr2: 29713724-29729859 Medicago truncatula
Medtr2g070540 10.0kb upstream 10.0kb upstream 10000 false chr2: 29713724-29723723 Medicago truncatula
Medtr2g070540 10.0kb downstream 10.0kb downstream 16136 true chr2: 29723724-29739859 Medicago truncatula
Medtr2g070540 10.0kb downstream 10.0kb downstream 10000 false chr2: 29729860-29739859 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303526 5265 Fabidae View MSA
124064964 5270 Rosid View MSA
123740266 5271 Pentapetalae View MSA
122794524 5272 Eudicot View MSA
122049515 5273 Angiosperm View MSA
121344395 5274 Embryophyte View MSA
123428747 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.553       High
cufflinks 2.648        
cufflinks 3.417        
cufflinks 1.818        
cufflinks 3.156        
cufflinks 1.278       Low
cufflinks 1.982        
cufflinks 2.734        
cufflinks 2.253        

0 Strain