Gene : Glyma.15G249900 G. max Wm82.a2.v1
Defline:  (1 of 4) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) Genomic Order:  2499
Name:  ? Glyma.15G249900 Secondary Identifier:  ? PAC:30496354
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G249900 0.5kb upstream 0.5kb upstream 7366 true Chr15: 47665559-47672924 Glycine max
Glyma.15G249900 0.5kb upstream 0.5kb upstream 500 false Chr15: 47672425-47672924 Glycine max
Glyma.15G249900 0.5kb downstream 0.5kb downstream 7366 true Chr15: 47665059-47672424 Glycine max
Glyma.15G249900 0.5kb downstream 0.5kb downstream 500 false Chr15: 47665059-47665558 Glycine max
Glyma.15G249900 1.0kb upstream 1.0kb upstream 7866 true Chr15: 47665559-47673424 Glycine max
Glyma.15G249900 1.0kb upstream 1.0kb upstream 1000 false Chr15: 47672425-47673424 Glycine max
Glyma.15G249900 1.0kb downstream 1.0kb downstream 7866 true Chr15: 47664559-47672424 Glycine max
Glyma.15G249900 1.0kb downstream 1.0kb downstream 1000 false Chr15: 47664559-47665558 Glycine max
Glyma.15G249900 2.0kb upstream 2.0kb upstream 8866 true Chr15: 47665559-47674424 Glycine max
Glyma.15G249900 2.0kb upstream 2.0kb upstream 2000 false Chr15: 47672425-47674424 Glycine max
Glyma.15G249900 2.0kb downstream 2.0kb downstream 8866 true Chr15: 47663559-47672424 Glycine max
Glyma.15G249900 2.0kb downstream 2.0kb downstream 2000 false Chr15: 47663559-47665558 Glycine max
Glyma.15G249900 5.0kb upstream 5.0kb upstream 11866 true Chr15: 47665559-47677424 Glycine max
Glyma.15G249900 5.0kb upstream 5.0kb upstream 5000 false Chr15: 47672425-47677424 Glycine max
Glyma.15G249900 5.0kb downstream 5.0kb downstream 11866 true Chr15: 47660559-47672424 Glycine max
Glyma.15G249900 5.0kb downstream 5.0kb downstream 5000 false Chr15: 47660559-47665558 Glycine max
Glyma.15G249900 10.0kb upstream 10.0kb upstream 16866 true Chr15: 47665559-47682424 Glycine max
Glyma.15G249900 10.0kb upstream 10.0kb upstream 10000 false Chr15: 47672425-47682424 Glycine max
Glyma.15G249900 10.0kb downstream 10.0kb downstream 16866 true Chr15: 47655559-47672424 Glycine max
Glyma.15G249900 10.0kb downstream 10.0kb downstream 10000 false Chr15: 47655559-47665558 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303526 5265 Fabidae View MSA
124064964 5270 Rosid View MSA
123740266 5271 Pentapetalae View MSA
122794524 5272 Eudicot View MSA
122049515 5273 Angiosperm View MSA
121344395 5274 Embryophyte View MSA
123428747 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.80354 0.0 31.0909   Low
cufflinks 16.9589 0.0 50.791    
cufflinks 17.0613 0.0 51.1351    
cufflinks 24.7026 0.0 74.1706 High  
cufflinks 22.5258 0.0 66.837 High  
cufflinks 22.1899 0.0 65.8113    
cufflinks 37.2094 0.0 115.746 High High
cufflinks 18.5796 0.0 55.5425    
cufflinks 35.2035 0.0 108.826 High High
cufflinks 2.723        
cufflinks 0.469       Low
cufflinks 4.633       High
cufflinks 5.161       High
cufflinks 2.881        
cufflinks 1.589        
cufflinks 1.709        
cufflinks 1.769        
cufflinks 4.8       High
cufflinks 4.132       High
cufflinks 1.991        
cufflinks 0.789       Low
cufflinks 2.263        
cufflinks 2.824        
cufflinks 0.832       Low
cufflinks 1.704        
cufflinks 1.615        

0 Strain