Gene : CID8 A. thaliana TAIR10
Primary Identifier:  ? AT1G53650 Defline:  (1 of 1) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein
Genomic Order:  4412 Name:  ? AT1G53650
Secondary Identifier:  ? PAC:19655934
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53650 0.5kb upstream 0.5kb upstream 3038 true Chr1: 20029029-20032066 Arabidopsis thaliana
AT1G53650 0.5kb upstream 0.5kb upstream 500 false Chr1: 20031567-20032066 Arabidopsis thaliana
AT1G53650 0.5kb downstream 0.5kb downstream 3038 true Chr1: 20028529-20031566 Arabidopsis thaliana
AT1G53650 0.5kb downstream 0.5kb downstream 500 false Chr1: 20028529-20029028 Arabidopsis thaliana
AT1G53650 1.0kb upstream 1.0kb upstream 3538 true Chr1: 20029029-20032566 Arabidopsis thaliana
AT1G53650 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20031567-20032566 Arabidopsis thaliana
AT1G53650 1.0kb downstream 1.0kb downstream 3538 true Chr1: 20028029-20031566 Arabidopsis thaliana
AT1G53650 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20028029-20029028 Arabidopsis thaliana
AT1G53650 2.0kb upstream 2.0kb upstream 4538 true Chr1: 20029029-20033566 Arabidopsis thaliana
AT1G53650 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20031567-20033566 Arabidopsis thaliana
AT1G53650 2.0kb downstream 2.0kb downstream 4538 true Chr1: 20027029-20031566 Arabidopsis thaliana
AT1G53650 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20027029-20029028 Arabidopsis thaliana
AT1G53650 5.0kb upstream 5.0kb upstream 7538 true Chr1: 20029029-20036566 Arabidopsis thaliana
AT1G53650 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20031567-20036566 Arabidopsis thaliana
AT1G53650 5.0kb downstream 5.0kb downstream 7538 true Chr1: 20024029-20031566 Arabidopsis thaliana
AT1G53650 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20024029-20029028 Arabidopsis thaliana
AT1G53650 10.0kb upstream 10.0kb upstream 12538 true Chr1: 20029029-20041566 Arabidopsis thaliana
AT1G53650 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20031567-20041566 Arabidopsis thaliana
AT1G53650 10.0kb downstream 10.0kb downstream 12538 true Chr1: 20019029-20031566 Arabidopsis thaliana
AT1G53650 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20019029-20029028 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366376 5261 Brassicaceae View MSA
123837031 5264 Brassicales-Malvales View MSA
124339957 5266 SBM View MSA
124251598 5268 Malvidae View MSA
124064964 5270 Rosid View MSA
123740266 5271 Pentapetalae View MSA
122794524 5272 Eudicot View MSA
122049515 5273 Angiosperm View MSA
121344395 5274 Embryophyte View MSA
123428747 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.43        
cufflinks 3.162        
cufflinks 2.473        
cufflinks 3.338       High
cufflinks 2.263       Low
cufflinks 2.912        

0 Strain