Protein Family : CTC-interacting domain 9 124339957

Method ID:  5266 Method Name:  SBM
Sequence Alignment:  View MSA Member Count:  20

20 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
orange1.1g022058m.g (1 of 1) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) C. sinensis v1.1 7307   scaffold00206: 264488-271794
AT3G14450 (1 of 4) PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) A. thaliana TAIR10 CID9 1814   Chr3: 4849788-4851601
AT1G53650 (1 of 1) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein A. thaliana TAIR10 CID8 2538   Chr1: 20029029-20031566
Thhalv10021108m.g (1 of 2) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) E. salsugineum v1.0 2434   scaffold_13: 4509935-4512368
Ciclev10021336m.g (1 of 1) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) C. clementina v1.0 7467   scaffold_3: 29395094-29402560
Gorai.002G038400 (1 of 5) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) G. raimondii v2.1 4437   Chr02: 3071440-3075876
Gorai.007G335300 (1 of 5) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) G. raimondii v2.1 4362   Chr07: 55967601-55971962
Thecc1EG032334 (1 of 1) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) T. cacao v1.1 5458   scaffold_7: 10177401-10182858
Araha.16722s0001 (1 of 1) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein A. halleri v1.1 2591   Scaffold16722: 9536-12126
Araha.22779s0004 (1 of 1) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) A. halleri v1.1 2651   Scaffold22779: 15990-18640
Cagra.9457s0004 (1 of 2) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein C. grandiflora v1.1 2632   Scaffold9457: 13874-16505
Cagra.12113s0005 (1 of 3) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) C. grandiflora v1.1 2044   Scaffold12113: 13930-15973
Brara.E01541 (1 of 1) KOG0148//KOG4210 - Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) // Nuclear localization sequence binding protein B. rapa FPsc v1.3 2424   A05: 10123335-10125758
Brara.C03528 (1 of 3) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein B. rapa FPsc v1.3 2100   A03: 17955252-17957351
Bostr.28625s0253 (1 of 1) KOG0121//KOG0131//KOG4210 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein B. stricta v1.2 2629   Scaffold28625: 1317681-1320309
Bostr.0124s0160 (1 of 1) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein B. stricta v1.2 2482   Scaffold124: 955539-958020
AL1G62320 (1 of 1) KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) A. lyrata v2.1 2575   scaffold_1: 28716505-28719079
AL3G26830 (1 of 4) PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) A. lyrata v2.1 2654   scaffold_3: 6073812-6076465
Carub.0001s4292 (1 of 3) PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) C. rubella v1.1 2259   scaffold_1: 18862342-18864600
Carub.0003s1418 (1 of 2) KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein C. rubella v1.1 2599   scaffold_3: 4977312-4979910

20 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
orange1.1g022058m C. sinensis v1.1 124339957 CTC-interacting domain 9 1 5266 SBM
Ciclev10021336m C. clementina v1.0 124339957 CTC-interacting domain 9 1 5266 SBM
Gorai.002G038400.1 G. raimondii v2.1 124339957 CTC-interacting domain 9 2 5266 SBM
Araha.22779s0004.1.p A. halleri v1.1 124339957 CTC-interacting domain 9 2 5266 SBM
Cagra.12113s0005.1.p C. grandiflora v1.1 124339957 CTC-interacting domain 9 2 5266 SBM
Brara.E01541.1.p B. rapa FPsc v1.3 124339957 CTC-interacting domain 9 2 5266 SBM
Bostr.0124s0160.1.p B. stricta v1.2 124339957 CTC-interacting domain 9 2 5266 SBM
AT1G53650.1 A. thaliana TAIR10 124339957 CTC-interacting domain 9 2 5266 SBM
AT3G14450.1 A. thaliana TAIR10 124339957 CTC-interacting domain 9 2 5266 SBM
Thhalv10021108m E. salsugineum v1.0 124339957 CTC-interacting domain 9 1 5266 SBM
Gorai.007G335300.1 G. raimondii v2.1 124339957 CTC-interacting domain 9 2 5266 SBM
Thecc1EG032334t1 T. cacao v1.1 124339957 CTC-interacting domain 9 1 5266 SBM
Araha.16722s0001.1.p A. halleri v1.1 124339957 CTC-interacting domain 9 2 5266 SBM
Cagra.9457s0004.1.p C. grandiflora v1.1 124339957 CTC-interacting domain 9 2 5266 SBM
Brara.C03528.1.p B. rapa FPsc v1.3 124339957 CTC-interacting domain 9 2 5266 SBM
Bostr.28625s0253.1.p B. stricta v1.2 124339957 CTC-interacting domain 9 2 5266 SBM
AL1G62320.t1 A. lyrata v2.1 124339957 CTC-interacting domain 9 2 5266 SBM
AL3G26830.t1 A. lyrata v2.1 124339957 CTC-interacting domain 9 2 5266 SBM
Carub.0003s1418.1.p C. rubella v1.1 124339957 CTC-interacting domain 9 2 5266 SBM
Carub.0001s4292.1.p C. rubella v1.1 124339957 CTC-interacting domain 9 2 5266 SBM