Gene : Glyma.08G178500 G. max Wm82.a2.v1
Defline:  (1 of 14) KOG1546 - Metacaspase involved in regulation of apoptosis Genomic Order:  1785
Name:  ? Glyma.08G178500 Secondary Identifier:  ? PAC:30535722
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G178500 0.5kb upstream 0.5kb upstream 3650 true Chr08: 14301940-14305589 Glycine max
Glyma.08G178500 0.5kb upstream 0.5kb upstream 500 false Chr08: 14301940-14302439 Glycine max
Glyma.08G178500 0.5kb downstream 0.5kb downstream 3650 true Chr08: 14302440-14306089 Glycine max
Glyma.08G178500 0.5kb downstream 0.5kb downstream 500 false Chr08: 14305590-14306089 Glycine max
Glyma.08G178500 1.0kb upstream 1.0kb upstream 4150 true Chr08: 14301440-14305589 Glycine max
Glyma.08G178500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 14301440-14302439 Glycine max
Glyma.08G178500 1.0kb downstream 1.0kb downstream 4150 true Chr08: 14302440-14306589 Glycine max
Glyma.08G178500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 14305590-14306589 Glycine max
Glyma.08G178500 2.0kb upstream 2.0kb upstream 5150 true Chr08: 14300440-14305589 Glycine max
Glyma.08G178500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 14300440-14302439 Glycine max
Glyma.08G178500 2.0kb downstream 2.0kb downstream 5150 true Chr08: 14302440-14307589 Glycine max
Glyma.08G178500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 14305590-14307589 Glycine max
Glyma.08G178500 5.0kb upstream 5.0kb upstream 8150 true Chr08: 14297440-14305589 Glycine max
Glyma.08G178500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 14297440-14302439 Glycine max
Glyma.08G178500 5.0kb downstream 5.0kb downstream 8150 true Chr08: 14302440-14310589 Glycine max
Glyma.08G178500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 14305590-14310589 Glycine max
Glyma.08G178500 10.0kb upstream 10.0kb upstream 13150 true Chr08: 14292440-14305589 Glycine max
Glyma.08G178500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 14292440-14302439 Glycine max
Glyma.08G178500 10.0kb downstream 10.0kb downstream 13150 true Chr08: 14302440-14315589 Glycine max
Glyma.08G178500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 14305590-14315589 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297835 5265 Fabidae View MSA
124037273 5270 Rosid View MSA
123744103 5271 Pentapetalae View MSA
122795793 5272 Eudicot View MSA
122050099 5273 Angiosperm View MSA
123428899 5275 Viridiplantae View MSA
121348125 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.9213 0.0 40.1282   High
cufflinks 1.40879 0.0 4.92703    
cufflinks 9.78967 0.0 26.9524    
cufflinks 1.71841 0.0 5.89078    
cufflinks 4.03762 0.0 12.3811    
cufflinks 1.04733 0.0 3.74954    
cufflinks 0.368414 0.0 1.3945   Low
cufflinks 11.4536 0.0 31.1989    
cufflinks 6.88658 0.0 19.6616    
cufflinks 2.163        
cufflinks 6.277     High High
cufflinks 6.143       High
cufflinks 3.163        
cufflinks 0.605        
cufflinks 0.212       Low
cufflinks 1.085        
cufflinks 3.418        
cufflinks 2.784        
cufflinks 0.198       Low
cufflinks 1.135        
cufflinks 8.399     High High
cufflinks 1.753        
cufflinks 0.592        
cufflinks 4.737        
cufflinks 1.422        
cufflinks 6.429     High High

0 Strain