Gene : Glyma.08G274200 G. max Wm82.a2.v1
Defline:  (1 of 309) PF00010 - Helix-loop-helix DNA-binding domain (HLH) Genomic Order:  2742
Name:  ? Glyma.08G274200 Secondary Identifier:  ? PAC:30536997
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G274200 0.5kb upstream 0.5kb upstream 2341 true Chr08: 36209848-36212188 Glycine max
Glyma.08G274200 0.5kb upstream 0.5kb upstream 500 false Chr08: 36211689-36212188 Glycine max
Glyma.08G274200 0.5kb downstream 0.5kb downstream 2341 true Chr08: 36209348-36211688 Glycine max
Glyma.08G274200 0.5kb downstream 0.5kb downstream 500 false Chr08: 36209348-36209847 Glycine max
Glyma.08G274200 1.0kb upstream 1.0kb upstream 2841 true Chr08: 36209848-36212688 Glycine max
Glyma.08G274200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 36211689-36212688 Glycine max
Glyma.08G274200 1.0kb downstream 1.0kb downstream 2841 true Chr08: 36208848-36211688 Glycine max
Glyma.08G274200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 36208848-36209847 Glycine max
Glyma.08G274200 2.0kb upstream 2.0kb upstream 3841 true Chr08: 36209848-36213688 Glycine max
Glyma.08G274200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 36211689-36213688 Glycine max
Glyma.08G274200 2.0kb downstream 2.0kb downstream 3841 true Chr08: 36207848-36211688 Glycine max
Glyma.08G274200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 36207848-36209847 Glycine max
Glyma.08G274200 5.0kb upstream 5.0kb upstream 6841 true Chr08: 36209848-36216688 Glycine max
Glyma.08G274200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 36211689-36216688 Glycine max
Glyma.08G274200 5.0kb downstream 5.0kb downstream 6841 true Chr08: 36204848-36211688 Glycine max
Glyma.08G274200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 36204848-36209847 Glycine max
Glyma.08G274200 10.0kb upstream 10.0kb upstream 11841 true Chr08: 36209848-36221688 Glycine max
Glyma.08G274200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 36211689-36221688 Glycine max
Glyma.08G274200 10.0kb downstream 10.0kb downstream 11841 true Chr08: 36199848-36211688 Glycine max
Glyma.08G274200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 36199848-36209847 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254183 5265 Fabidae View MSA
124070728 5270 Rosid View MSA
123747636 5271 Pentapetalae View MSA
122790182 5272 Eudicot View MSA
122048874 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.358102 0.0 1.34743   Low
cufflinks 10.2565 0.0 27.8687    
cufflinks 2.48091 0.0 7.91064    
cufflinks 7.23277 0.0 20.1577    
cufflinks 9.50509 0.0 25.9784    
cufflinks 5.28643 0.0 15.2814    
cufflinks 9.87528 0.0 26.9167    
cufflinks 8.99226 0.0 24.5997    
cufflinks 2.97643 0.0 9.3093    
cufflinks 19.776     High High
cufflinks 0.52        
cufflinks 6.572        
cufflinks 11.633     High  
cufflinks 14.031     High  
cufflinks 0.029     Low Low
cufflinks 4.908        
cufflinks 1.069        
cufflinks 20.08     High High
cufflinks 8.881     High  
cufflinks 4.525        
cufflinks 0.575        
cufflinks 3.465        
cufflinks 5.139        
cufflinks 0.335       Low
cufflinks 7.019     High  
cufflinks 1.405        

0 Strain