Gene : Glyma.08G274400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  2744
Name:  ? Glyma.08G274400 Secondary Identifier:  ? PAC:30536040
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYSYN-PWY Glycine max pathologic  
Gmax PWY-2161 Glycine max pathologic  
Gmax PWY-3841 Glycine max pathologic  
Gmax SER-GLYSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G274400 0.5kb upstream 0.5kb upstream 6773 true Chr08: 36279886-36286658 Glycine max
Glyma.08G274400 0.5kb upstream 0.5kb upstream 500 false Chr08: 36286159-36286658 Glycine max
Glyma.08G274400 0.5kb downstream 0.5kb downstream 6773 true Chr08: 36279386-36286158 Glycine max
Glyma.08G274400 0.5kb downstream 0.5kb downstream 500 false Chr08: 36279386-36279885 Glycine max
Glyma.08G274400 1.0kb upstream 1.0kb upstream 7273 true Chr08: 36279886-36287158 Glycine max
Glyma.08G274400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 36286159-36287158 Glycine max
Glyma.08G274400 1.0kb downstream 1.0kb downstream 7273 true Chr08: 36278886-36286158 Glycine max
Glyma.08G274400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 36278886-36279885 Glycine max
Glyma.08G274400 2.0kb upstream 2.0kb upstream 8273 true Chr08: 36279886-36288158 Glycine max
Glyma.08G274400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 36286159-36288158 Glycine max
Glyma.08G274400 2.0kb downstream 2.0kb downstream 8273 true Chr08: 36277886-36286158 Glycine max
Glyma.08G274400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 36277886-36279885 Glycine max
Glyma.08G274400 5.0kb upstream 5.0kb upstream 11273 true Chr08: 36279886-36291158 Glycine max
Glyma.08G274400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 36286159-36291158 Glycine max
Glyma.08G274400 5.0kb downstream 5.0kb downstream 11273 true Chr08: 36274886-36286158 Glycine max
Glyma.08G274400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 36274886-36279885 Glycine max
Glyma.08G274400 10.0kb upstream 10.0kb upstream 16273 true Chr08: 36279886-36296158 Glycine max
Glyma.08G274400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 36286159-36296158 Glycine max
Glyma.08G274400 10.0kb downstream 10.0kb downstream 16273 true Chr08: 36269886-36286158 Glycine max
Glyma.08G274400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 36269886-36279885 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314119 5265 Fabidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 350.417 0.0 3837.81 High High
cufflinks 34.8622 0.0 135.824 High  
cufflinks 33.8722 0.0 133.628 High  
cufflinks 37.1174 0.0 145.928 High  
cufflinks 1.9406 0.0 6.65236    
cufflinks 0.957535 0.0 4.03772   Low
cufflinks 1.50211 0.0 5.4931    
cufflinks 24.3689 0.0 89.0442 High  
cufflinks 2.0881 0.0 6.95109    
cufflinks 2.939        
cufflinks 0.036     Low Low
cufflinks 5.032        
cufflinks 0.073     Low  
cufflinks 0.059     Low  
cufflinks 0.119        
cufflinks 56.398     High High
cufflinks 0.018     Low Low
cufflinks 6.977        
cufflinks 4.214        
cufflinks 73.109     High High
cufflinks 0.016     Low Low
cufflinks 62.752     High High
cufflinks 34.51     High High
cufflinks 0.034     Low Low
cufflinks 67.621     High High
cufflinks 0.047     Low  

0 Strain