Gene : Glyma.08G303200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31339:SF3 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  3032
Name:  ? Glyma.08G303200 Secondary Identifier:  ? PAC:30540050
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G303200 0.5kb upstream 0.5kb upstream 5622 true Chr08: 42128716-42134337 Glycine max
Glyma.08G303200 0.5kb upstream 0.5kb upstream 500 false Chr08: 42133838-42134337 Glycine max
Glyma.08G303200 0.5kb downstream 0.5kb downstream 5622 true Chr08: 42128216-42133837 Glycine max
Glyma.08G303200 0.5kb downstream 0.5kb downstream 500 false Chr08: 42128216-42128715 Glycine max
Glyma.08G303200 1.0kb upstream 1.0kb upstream 6122 true Chr08: 42128716-42134837 Glycine max
Glyma.08G303200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 42133838-42134837 Glycine max
Glyma.08G303200 1.0kb downstream 1.0kb downstream 6122 true Chr08: 42127716-42133837 Glycine max
Glyma.08G303200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 42127716-42128715 Glycine max
Glyma.08G303200 2.0kb upstream 2.0kb upstream 7122 true Chr08: 42128716-42135837 Glycine max
Glyma.08G303200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 42133838-42135837 Glycine max
Glyma.08G303200 2.0kb downstream 2.0kb downstream 7122 true Chr08: 42126716-42133837 Glycine max
Glyma.08G303200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 42126716-42128715 Glycine max
Glyma.08G303200 5.0kb upstream 5.0kb upstream 10122 true Chr08: 42128716-42138837 Glycine max
Glyma.08G303200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 42133838-42138837 Glycine max
Glyma.08G303200 5.0kb downstream 5.0kb downstream 10122 true Chr08: 42123716-42133837 Glycine max
Glyma.08G303200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 42123716-42128715 Glycine max
Glyma.08G303200 10.0kb upstream 10.0kb upstream 15122 true Chr08: 42128716-42143837 Glycine max
Glyma.08G303200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 42133838-42143837 Glycine max
Glyma.08G303200 10.0kb downstream 10.0kb downstream 15122 true Chr08: 42118716-42133837 Glycine max
Glyma.08G303200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 42118716-42128715 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309938 5265 Fabidae View MSA
124068790 5270 Rosid View MSA
123750748 5271 Pentapetalae View MSA
122786730 5272 Eudicot View MSA
122043550 5273 Angiosperm View MSA
121310146 5274 Embryophyte View MSA
123347715 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.69426 0.0 8.5751    
cufflinks 7.22487 0.0 20.2532    
cufflinks 1.96893 0.0 6.53602    
cufflinks 1.9318 0.0 6.4375    
cufflinks 6.82425 0.0 19.2018    
cufflinks 2.80711 0.0 8.88492    
cufflinks 2.34898 0.0 7.60715    
cufflinks 13.0169 0.0 34.9874   High
cufflinks 2.95697 0.0 9.28311    
cufflinks 10.176     High High
cufflinks 0.129       Low
cufflinks 1.043        
cufflinks 1.804        
cufflinks 2.529        
cufflinks 0.171       Low
cufflinks 4.984        
cufflinks 0.658        
cufflinks 2.81        
cufflinks 1.431        
cufflinks 3.888        
cufflinks 0.288        
cufflinks 4.48        
cufflinks 5.7       High
cufflinks 0.068       Low
cufflinks 4.721        
cufflinks 0.476        

0 Strain