Gene : Glyma.08G287600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR30544//PTHR30544:SF3 - 23S RRNA METHYLTRANSFERASE Genomic Order:  2876
Name:  ? Glyma.08G287600 Secondary Identifier:  ? PAC:30536828
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G287600 0.5kb upstream 0.5kb upstream 7217 true Chr08: 39865840-39873056 Glycine max
Glyma.08G287600 0.5kb upstream 0.5kb upstream 500 false Chr08: 39872557-39873056 Glycine max
Glyma.08G287600 0.5kb downstream 0.5kb downstream 7217 true Chr08: 39865340-39872556 Glycine max
Glyma.08G287600 0.5kb downstream 0.5kb downstream 500 false Chr08: 39865340-39865839 Glycine max
Glyma.08G287600 1.0kb upstream 1.0kb upstream 7717 true Chr08: 39865840-39873556 Glycine max
Glyma.08G287600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 39872557-39873556 Glycine max
Glyma.08G287600 1.0kb downstream 1.0kb downstream 7717 true Chr08: 39864840-39872556 Glycine max
Glyma.08G287600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 39864840-39865839 Glycine max
Glyma.08G287600 2.0kb upstream 2.0kb upstream 8717 true Chr08: 39865840-39874556 Glycine max
Glyma.08G287600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 39872557-39874556 Glycine max
Glyma.08G287600 2.0kb downstream 2.0kb downstream 8717 true Chr08: 39863840-39872556 Glycine max
Glyma.08G287600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 39863840-39865839 Glycine max
Glyma.08G287600 5.0kb upstream 5.0kb upstream 11717 true Chr08: 39865840-39877556 Glycine max
Glyma.08G287600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 39872557-39877556 Glycine max
Glyma.08G287600 5.0kb downstream 5.0kb downstream 11717 true Chr08: 39860840-39872556 Glycine max
Glyma.08G287600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 39860840-39865839 Glycine max
Glyma.08G287600 10.0kb upstream 10.0kb upstream 16717 true Chr08: 39865840-39882556 Glycine max
Glyma.08G287600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 39872557-39882556 Glycine max
Glyma.08G287600 10.0kb downstream 10.0kb downstream 16717 true Chr08: 39855840-39872556 Glycine max
Glyma.08G287600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 39855840-39865839 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305533 5265 Fabidae View MSA
124065414 5270 Rosid View MSA
123740690 5271 Pentapetalae View MSA
122787851 5272 Eudicot View MSA
122043195 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346291 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.4362 0.0 96.3092   High
cufflinks 8.43284 0.0 50.6978    
cufflinks 15.4341 0.0 86.408   High
cufflinks 7.19299 0.0 48.646    
cufflinks 6.78412 0.0 44.8923    
cufflinks 3.25713 0.0 15.8839   Low
cufflinks 6.92811 0.0 45.2024    
cufflinks 8.04883 0.0 51.5614    
cufflinks 6.69424 0.0 43.9577    
cufflinks 0.187        
cufflinks 0.045     Low Low
cufflinks 0.46        
cufflinks 0.249        
cufflinks 0.333        
cufflinks 0.332        
cufflinks 0.459        
cufflinks 0.083       Low
cufflinks 0.48        
cufflinks 0.362        
cufflinks 0.572        
cufflinks 0.058     Low Low
cufflinks 0.544        
cufflinks 0.525        
cufflinks 0.057     Low Low
cufflinks 0.532        
cufflinks 0.082       Low

0 Strain