Gene : Glyma.08G285400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31375:SF46 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  2854
Name:  ? Glyma.08G285400 Secondary Identifier:  ? PAC:30539988
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1081 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G285400 0.5kb upstream 0.5kb upstream 5982 true Chr08: 39492743-39498724 Glycine max
Glyma.08G285400 0.5kb upstream 0.5kb upstream 500 false Chr08: 39492743-39493242 Glycine max
Glyma.08G285400 0.5kb downstream 0.5kb downstream 5982 true Chr08: 39493243-39499224 Glycine max
Glyma.08G285400 0.5kb downstream 0.5kb downstream 500 false Chr08: 39498725-39499224 Glycine max
Glyma.08G285400 1.0kb upstream 1.0kb upstream 6482 true Chr08: 39492243-39498724 Glycine max
Glyma.08G285400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 39492243-39493242 Glycine max
Glyma.08G285400 1.0kb downstream 1.0kb downstream 6482 true Chr08: 39493243-39499724 Glycine max
Glyma.08G285400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 39498725-39499724 Glycine max
Glyma.08G285400 2.0kb upstream 2.0kb upstream 7482 true Chr08: 39491243-39498724 Glycine max
Glyma.08G285400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 39491243-39493242 Glycine max
Glyma.08G285400 2.0kb downstream 2.0kb downstream 7482 true Chr08: 39493243-39500724 Glycine max
Glyma.08G285400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 39498725-39500724 Glycine max
Glyma.08G285400 5.0kb upstream 5.0kb upstream 10482 true Chr08: 39488243-39498724 Glycine max
Glyma.08G285400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 39488243-39493242 Glycine max
Glyma.08G285400 5.0kb downstream 5.0kb downstream 10482 true Chr08: 39493243-39503724 Glycine max
Glyma.08G285400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 39498725-39503724 Glycine max
Glyma.08G285400 10.0kb upstream 10.0kb upstream 15482 true Chr08: 39483243-39498724 Glycine max
Glyma.08G285400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 39483243-39493242 Glycine max
Glyma.08G285400 10.0kb downstream 10.0kb downstream 15482 true Chr08: 39493243-39508724 Glycine max
Glyma.08G285400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 39498725-39508724 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302874 5265 Fabidae View MSA
124069047 5270 Rosid View MSA
123746876 5271 Pentapetalae View MSA
122793930 5272 Eudicot View MSA
122049793 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.252526 0.0 1.22883   Low
cufflinks 2.02254 0.0 7.01017    
cufflinks 1.04962 0.0 4.4193    
cufflinks 33.6114 0.0 115.762 High High
cufflinks 3.53939 0.0 15.2105    
cufflinks 1.61351 0.0 5.96065    
cufflinks 12.6497 0.0 41.1156    
cufflinks 4.11679 0.0 16.5388    
cufflinks 9.64522 0.0 32.7596    
cufflinks 0.33        
cufflinks 0.007     Low Low
cufflinks 0.946        
cufflinks 0.878        
cufflinks 1.231        
cufflinks 0.106        
cufflinks 2.473        
cufflinks 0.052     Low Low
cufflinks 4.765       High
cufflinks 0.975        
cufflinks 2.897        
cufflinks 0.019     Low Low
cufflinks 2.856        
cufflinks 4.381       High
cufflinks 0.099        
cufflinks 3.089        
cufflinks 0.049     Low Low

0 Strain