Gene : Glyma.08G332000 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR22807:SF30 - RIBOSOMAL RNA METHYLTRANSFERASE NOP2-RELATED Genomic Order:  3320
Name:  ? Glyma.08G332000 Secondary Identifier:  ? PAC:30539967
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G332000 0.5kb upstream 0.5kb upstream 7341 true Chr08: 44937110-44944450 Glycine max
Glyma.08G332000 0.5kb upstream 0.5kb upstream 500 false Chr08: 44943951-44944450 Glycine max
Glyma.08G332000 0.5kb downstream 0.5kb downstream 7341 true Chr08: 44936610-44943950 Glycine max
Glyma.08G332000 0.5kb downstream 0.5kb downstream 500 false Chr08: 44936610-44937109 Glycine max
Glyma.08G332000 1.0kb upstream 1.0kb upstream 7841 true Chr08: 44937110-44944950 Glycine max
Glyma.08G332000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 44943951-44944950 Glycine max
Glyma.08G332000 1.0kb downstream 1.0kb downstream 7841 true Chr08: 44936110-44943950 Glycine max
Glyma.08G332000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 44936110-44937109 Glycine max
Glyma.08G332000 2.0kb upstream 2.0kb upstream 8841 true Chr08: 44937110-44945950 Glycine max
Glyma.08G332000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 44943951-44945950 Glycine max
Glyma.08G332000 2.0kb downstream 2.0kb downstream 8841 true Chr08: 44935110-44943950 Glycine max
Glyma.08G332000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 44935110-44937109 Glycine max
Glyma.08G332000 5.0kb upstream 5.0kb upstream 11841 true Chr08: 44937110-44948950 Glycine max
Glyma.08G332000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 44943951-44948950 Glycine max
Glyma.08G332000 5.0kb downstream 5.0kb downstream 11841 true Chr08: 44932110-44943950 Glycine max
Glyma.08G332000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 44932110-44937109 Glycine max
Glyma.08G332000 10.0kb upstream 10.0kb upstream 16841 true Chr08: 44937110-44953950 Glycine max
Glyma.08G332000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 44943951-44953950 Glycine max
Glyma.08G332000 10.0kb downstream 10.0kb downstream 16841 true Chr08: 44927110-44943950 Glycine max
Glyma.08G332000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 44927110-44937109 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303204 5265 Fabidae View MSA
124073549 5270 Rosid View MSA
123740047 5271 Pentapetalae View MSA
122787436 5272 Eudicot View MSA
122043907 5273 Angiosperm View MSA
121346553 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.9079 0.0 58.7688   High
cufflinks 8.22519 0.0 24.7825    
cufflinks 4.50724 0.0 14.8339   Low
cufflinks 7.04509 0.0 26.3165    
cufflinks 16.4275 0.0 60.5915   High
cufflinks 7.33267 0.0 22.3674    
cufflinks 8.71088 0.0 31.6808    
cufflinks 10.4682 0.0 37.6658    
cufflinks 8.87133 0.0 26.6926    
cufflinks 1.179        
cufflinks 0.321       Low
cufflinks 1.535        
cufflinks 4.185       High
cufflinks 5.783       High
cufflinks 0.71        
cufflinks 0.971        
cufflinks 0.997        
cufflinks 1.188        
cufflinks 2.055        
cufflinks 0.534        
cufflinks 0.764        
cufflinks 0.69        
cufflinks 1.367        
cufflinks 0.417       Low
cufflinks 0.814        
cufflinks 0.864        

0 Strain