Gene : Glyma.08G312000 G. max Wm82.a2.v1
Defline:  (1 of 27) PTHR31642:SF57 - SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE Genomic Order:  3120
Name:  ? Glyma.08G312000 Secondary Identifier:  ? PAC:30540745
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-361 Glycine max pathologic  
Gmax PWY-6040 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G312000 0.5kb upstream 0.5kb upstream 2551 true Chr08: 43135151-43137701 Glycine max
Glyma.08G312000 0.5kb upstream 0.5kb upstream 500 false Chr08: 43135151-43135650 Glycine max
Glyma.08G312000 0.5kb downstream 0.5kb downstream 2551 true Chr08: 43135651-43138201 Glycine max
Glyma.08G312000 0.5kb downstream 0.5kb downstream 500 false Chr08: 43137702-43138201 Glycine max
Glyma.08G312000 1.0kb upstream 1.0kb upstream 3051 true Chr08: 43134651-43137701 Glycine max
Glyma.08G312000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 43134651-43135650 Glycine max
Glyma.08G312000 1.0kb downstream 1.0kb downstream 3051 true Chr08: 43135651-43138701 Glycine max
Glyma.08G312000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 43137702-43138701 Glycine max
Glyma.08G312000 2.0kb upstream 2.0kb upstream 4051 true Chr08: 43133651-43137701 Glycine max
Glyma.08G312000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 43133651-43135650 Glycine max
Glyma.08G312000 2.0kb downstream 2.0kb downstream 4051 true Chr08: 43135651-43139701 Glycine max
Glyma.08G312000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 43137702-43139701 Glycine max
Glyma.08G312000 5.0kb upstream 5.0kb upstream 7051 true Chr08: 43130651-43137701 Glycine max
Glyma.08G312000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 43130651-43135650 Glycine max
Glyma.08G312000 5.0kb downstream 5.0kb downstream 7051 true Chr08: 43135651-43142701 Glycine max
Glyma.08G312000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 43137702-43142701 Glycine max
Glyma.08G312000 10.0kb upstream 10.0kb upstream 12051 true Chr08: 43125651-43137701 Glycine max
Glyma.08G312000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 43125651-43135650 Glycine max
Glyma.08G312000 10.0kb downstream 10.0kb downstream 12051 true Chr08: 43135651-43147701 Glycine max
Glyma.08G312000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 43137702-43147701 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792312 5273 Angiosperm View MSA
122298352 5265 Fabidae View MSA
124036429 5270 Rosid View MSA
123609777 5271 Pentapetalae View MSA
122797299 5272 Eudicot View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.6084 0.0 107.243 High High
cufflinks 0.0106459 0.0 0.0482794 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0117617 0.0 0.0527777 Low Low
cufflinks 0.760226 0.0 2.7246    
cufflinks 0.475775 0.0 1.75353    
cufflinks 0.648919 0.0 2.34837    
cufflinks 0.032897 0.0 0.136059 Low  
cufflinks 0.386671 0.0 1.43991    
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  
cufflinks 0.113     Low  
cufflinks 0.251       High
cufflinks 0.015     Low  
cufflinks 0.028     Low  
cufflinks 0.112        
cufflinks 0.009     Low Low
cufflinks 0.011     Low Low
cufflinks 0.008     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.06     Low  
cufflinks 0.045     Low  
cufflinks 0.317       High
cufflinks 0.028     Low  
cufflinks 0.097     Low  
cufflinks 0.012     Low  

0 Strain