Gene : Glyma.08G345600 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR23089:SF7 - HIT FAMILY PROTEIN 1 Genomic Order:  3456
Name:  ? Glyma.08G345600 Secondary Identifier:  ? PAC:30540152
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G345600 0.5kb upstream 0.5kb upstream 5279 true Chr08: 46050599-46055877 Glycine max
Glyma.08G345600 0.5kb upstream 0.5kb upstream 500 false Chr08: 46050599-46051098 Glycine max
Glyma.08G345600 0.5kb downstream 0.5kb downstream 5279 true Chr08: 46051099-46056377 Glycine max
Glyma.08G345600 0.5kb downstream 0.5kb downstream 500 false Chr08: 46055878-46056377 Glycine max
Glyma.08G345600 1.0kb upstream 1.0kb upstream 5779 true Chr08: 46050099-46055877 Glycine max
Glyma.08G345600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 46050099-46051098 Glycine max
Glyma.08G345600 1.0kb downstream 1.0kb downstream 5779 true Chr08: 46051099-46056877 Glycine max
Glyma.08G345600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 46055878-46056877 Glycine max
Glyma.08G345600 2.0kb upstream 2.0kb upstream 6779 true Chr08: 46049099-46055877 Glycine max
Glyma.08G345600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 46049099-46051098 Glycine max
Glyma.08G345600 2.0kb downstream 2.0kb downstream 6779 true Chr08: 46051099-46057877 Glycine max
Glyma.08G345600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 46055878-46057877 Glycine max
Glyma.08G345600 5.0kb upstream 5.0kb upstream 9779 true Chr08: 46046099-46055877 Glycine max
Glyma.08G345600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 46046099-46051098 Glycine max
Glyma.08G345600 5.0kb downstream 5.0kb downstream 9779 true Chr08: 46051099-46060877 Glycine max
Glyma.08G345600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 46055878-46060877 Glycine max
Glyma.08G345600 10.0kb upstream 10.0kb upstream 14779 true Chr08: 46041099-46055877 Glycine max
Glyma.08G345600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 46041099-46051098 Glycine max
Glyma.08G345600 10.0kb downstream 10.0kb downstream 14779 true Chr08: 46051099-46065877 Glycine max
Glyma.08G345600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 46055878-46065877 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302528 5265 Fabidae View MSA
124050328 5270 Rosid View MSA
123747723 5271 Pentapetalae View MSA
122788071 5272 Eudicot View MSA
122049116 5273 Angiosperm View MSA
121311254 5274 Embryophyte View MSA
123425482 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.6808 0.0 32.725   High
cufflinks 6.13017 0.0 18.5774    
cufflinks 7.67674 0.0 22.6005    
cufflinks 5.28136 0.0 16.3673    
cufflinks 4.10677 0.0 13.1799   Low
cufflinks 6.63897 0.0 19.8776    
cufflinks 4.21136 0.0 13.4894    
cufflinks 4.50187 0.0 14.2483    
cufflinks 5.45575 0.0 16.7883    
cufflinks 0.837        
cufflinks 1.135        
cufflinks 1.08        
cufflinks 0.762       Low
cufflinks 0.58       Low
cufflinks 1.128        
cufflinks 2.85       High
cufflinks 1.131        
cufflinks 1.085        
cufflinks 1.495        
cufflinks 3.285       High
cufflinks 1.154        
cufflinks 2.881       High
cufflinks 2.099        
cufflinks 1.213        
cufflinks 2.76       High
cufflinks 1.112        

0 Strain