Gene : Glyma.08G337000 G. max Wm82.a2.v1
Defline:  (1 of 12) KOG1397 - Ca2+/H+ antiporter VCX1 and related proteins Genomic Order:  3370
Name:  ? Glyma.08G337000 Secondary Identifier:  ? PAC:30535865
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G337000 0.5kb upstream 0.5kb upstream 6061 true Chr08: 45389334-45395394 Glycine max
Glyma.08G337000 0.5kb upstream 0.5kb upstream 500 false Chr08: 45394895-45395394 Glycine max
Glyma.08G337000 0.5kb downstream 0.5kb downstream 6061 true Chr08: 45388834-45394894 Glycine max
Glyma.08G337000 0.5kb downstream 0.5kb downstream 500 false Chr08: 45388834-45389333 Glycine max
Glyma.08G337000 1.0kb upstream 1.0kb upstream 6561 true Chr08: 45389334-45395894 Glycine max
Glyma.08G337000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 45394895-45395894 Glycine max
Glyma.08G337000 1.0kb downstream 1.0kb downstream 6561 true Chr08: 45388334-45394894 Glycine max
Glyma.08G337000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 45388334-45389333 Glycine max
Glyma.08G337000 2.0kb upstream 2.0kb upstream 7561 true Chr08: 45389334-45396894 Glycine max
Glyma.08G337000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 45394895-45396894 Glycine max
Glyma.08G337000 2.0kb downstream 2.0kb downstream 7561 true Chr08: 45387334-45394894 Glycine max
Glyma.08G337000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 45387334-45389333 Glycine max
Glyma.08G337000 5.0kb upstream 5.0kb upstream 10561 true Chr08: 45389334-45399894 Glycine max
Glyma.08G337000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 45394895-45399894 Glycine max
Glyma.08G337000 5.0kb downstream 5.0kb downstream 10561 true Chr08: 45384334-45394894 Glycine max
Glyma.08G337000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 45384334-45389333 Glycine max
Glyma.08G337000 10.0kb upstream 10.0kb upstream 15561 true Chr08: 45389334-45404894 Glycine max
Glyma.08G337000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 45394895-45404894 Glycine max
Glyma.08G337000 10.0kb downstream 10.0kb downstream 15561 true Chr08: 45379334-45394894 Glycine max
Glyma.08G337000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 45379334-45389333 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306798 5265 Fabidae View MSA
124071439 5270 Rosid View MSA
123747660 5271 Pentapetalae View MSA
122792881 5272 Eudicot View MSA
122045212 5273 Angiosperm View MSA
121347037 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.26674 0.0 4.42111    
cufflinks 2.2975 0.0 7.48892   High
cufflinks 0.598014 0.0 2.19322    
cufflinks 1.90097 0.0 6.34723    
cufflinks 0.455481 0.0 1.699    
cufflinks 2.36865 0.0 7.67811   High
cufflinks 0.744906 0.0 2.70674    
cufflinks 0.455293 0.0 1.69716    
cufflinks 0.360795 0.0 1.35942   Low
cufflinks 0.53        
cufflinks 0.075       Low
cufflinks 0.549        
cufflinks 0.379        
cufflinks 0.503        
cufflinks 0.05     Low Low
cufflinks 0.456        
cufflinks 0.077       Low
cufflinks 1.14       High
cufflinks 1.332       High
cufflinks 0.346        
cufflinks 0.07       Low
cufflinks 0.454        
cufflinks 1.599       High
cufflinks 0.034     Low Low
cufflinks 0.472        
cufflinks 0.082        

0 Strain