Gene : Glyma.09G071500 G. max Wm82.a2.v1
Defline:  (1 of 62) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  715
Name:  ? Glyma.09G071500 Secondary Identifier:  ? PAC:30483073
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G071500 0.5kb upstream 0.5kb upstream 6424 true Chr09: 7308529-7314952 Glycine max
Glyma.09G071500 0.5kb upstream 0.5kb upstream 500 false Chr09: 7308529-7309028 Glycine max
Glyma.09G071500 0.5kb downstream 0.5kb downstream 6424 true Chr09: 7309029-7315452 Glycine max
Glyma.09G071500 0.5kb downstream 0.5kb downstream 500 false Chr09: 7314953-7315452 Glycine max
Glyma.09G071500 1.0kb upstream 1.0kb upstream 6924 true Chr09: 7308029-7314952 Glycine max
Glyma.09G071500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 7308029-7309028 Glycine max
Glyma.09G071500 1.0kb downstream 1.0kb downstream 6924 true Chr09: 7309029-7315952 Glycine max
Glyma.09G071500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 7314953-7315952 Glycine max
Glyma.09G071500 2.0kb upstream 2.0kb upstream 7924 true Chr09: 7307029-7314952 Glycine max
Glyma.09G071500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 7307029-7309028 Glycine max
Glyma.09G071500 2.0kb downstream 2.0kb downstream 7924 true Chr09: 7309029-7316952 Glycine max
Glyma.09G071500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 7314953-7316952 Glycine max
Glyma.09G071500 5.0kb upstream 5.0kb upstream 10924 true Chr09: 7304029-7314952 Glycine max
Glyma.09G071500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 7304029-7309028 Glycine max
Glyma.09G071500 5.0kb downstream 5.0kb downstream 10924 true Chr09: 7309029-7319952 Glycine max
Glyma.09G071500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 7314953-7319952 Glycine max
Glyma.09G071500 10.0kb upstream 10.0kb upstream 15924 true Chr09: 7299029-7314952 Glycine max
Glyma.09G071500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 7299029-7309028 Glycine max
Glyma.09G071500 10.0kb downstream 10.0kb downstream 15924 true Chr09: 7309029-7324952 Glycine max
Glyma.09G071500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 7314953-7324952 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
122296274 5265 Fabidae View MSA
124042732 5270 Rosid View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.16833 0.0 6.94192    
cufflinks 1.09839 0.0 3.82312    
cufflinks 0.859682 0.0 3.04845   Low
cufflinks 32.7375 0.0 89.7178 High High
cufflinks 5.44817 0.0 15.4088    
cufflinks 1.80105 0.0 5.91535    
cufflinks 1.14739 0.0 3.96946    
cufflinks 26.9751 0.0 72.9363 High High
cufflinks 10.4912 0.0 28.2512    
cufflinks 3.165       High
cufflinks 0.965        
cufflinks 0.223       Low
cufflinks 2.907       High
cufflinks 0.294       Low
cufflinks 0.853        
cufflinks 0.429        
cufflinks 2.069       High
cufflinks 0.472        
cufflinks 0.723        
cufflinks 0.44        
cufflinks 1.757        
cufflinks 0.518        
cufflinks 0.266       Low
cufflinks 1.942        
cufflinks 0.466        
cufflinks 2.616       High

0 Strain