Gene : Glyma.09G066200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  662
Name:  ? Glyma.09G066200 Secondary Identifier:  ? PAC:30483656
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-5175 Glycine max pathologic  
Gmax PWY-5946 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G066200 0.5kb upstream 0.5kb upstream 11260 true Chr09: 6474861-6486120 Glycine max
Glyma.09G066200 0.5kb upstream 0.5kb upstream 500 false Chr09: 6474861-6475360 Glycine max
Glyma.09G066200 0.5kb downstream 0.5kb downstream 11260 true Chr09: 6475361-6486620 Glycine max
Glyma.09G066200 0.5kb downstream 0.5kb downstream 500 false Chr09: 6486121-6486620 Glycine max
Glyma.09G066200 1.0kb upstream 1.0kb upstream 11760 true Chr09: 6474361-6486120 Glycine max
Glyma.09G066200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 6474361-6475360 Glycine max
Glyma.09G066200 1.0kb downstream 1.0kb downstream 11760 true Chr09: 6475361-6487120 Glycine max
Glyma.09G066200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 6486121-6487120 Glycine max
Glyma.09G066200 2.0kb upstream 2.0kb upstream 12760 true Chr09: 6473361-6486120 Glycine max
Glyma.09G066200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 6473361-6475360 Glycine max
Glyma.09G066200 2.0kb downstream 2.0kb downstream 12760 true Chr09: 6475361-6488120 Glycine max
Glyma.09G066200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 6486121-6488120 Glycine max
Glyma.09G066200 5.0kb upstream 5.0kb upstream 15760 true Chr09: 6470361-6486120 Glycine max
Glyma.09G066200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 6470361-6475360 Glycine max
Glyma.09G066200 5.0kb downstream 5.0kb downstream 15760 true Chr09: 6475361-6491120 Glycine max
Glyma.09G066200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 6486121-6491120 Glycine max
Glyma.09G066200 10.0kb upstream 10.0kb upstream 20760 true Chr09: 6465361-6486120 Glycine max
Glyma.09G066200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 6465361-6475360 Glycine max
Glyma.09G066200 10.0kb downstream 10.0kb downstream 20760 true Chr09: 6475361-6496120 Glycine max
Glyma.09G066200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 6486121-6496120 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305319 5265 Fabidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.0397 0.0 40.1268   High
cufflinks 15.3251 0.0 40.8874   High
cufflinks 4.34108 0.0 12.5723    
cufflinks 3.39078 0.0 10.1479    
cufflinks 1.38017 0.0 4.66344    
cufflinks 0.985007 0.0 3.44524    
cufflinks 2.52653 0.0 7.89004    
cufflinks 3.47922 0.0 10.3858    
cufflinks 0.339499 0.0 1.26967   Low
cufflinks 1.523        
cufflinks 0.005     Low Low
cufflinks 1.399        
cufflinks 0.095        
cufflinks 0.15        
cufflinks 0.024     Low  
cufflinks 8.547     High High
cufflinks 0.004     Low Low
cufflinks 2.224        
cufflinks 2.472        
cufflinks 11.905     High High
cufflinks 0.022     Low  
cufflinks 9.359     High High
cufflinks 5.167        
cufflinks 0.009     Low Low
cufflinks 10.306     High High
cufflinks 0.027     Low  

0 Strain