Gene : Glyma.09G060100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10459:SF72 - DNA LIGASE 4 Genomic Order:  601
Name:  ? Glyma.09G060100 Secondary Identifier:  ? PAC:30485738
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G060100 0.5kb upstream 0.5kb upstream 10218 true Chr09: 5560572-5570789 Glycine max
Glyma.09G060100 0.5kb upstream 0.5kb upstream 500 false Chr09: 5560572-5561071 Glycine max
Glyma.09G060100 0.5kb downstream 0.5kb downstream 10218 true Chr09: 5561072-5571289 Glycine max
Glyma.09G060100 0.5kb downstream 0.5kb downstream 500 false Chr09: 5570790-5571289 Glycine max
Glyma.09G060100 1.0kb upstream 1.0kb upstream 10718 true Chr09: 5560072-5570789 Glycine max
Glyma.09G060100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 5560072-5561071 Glycine max
Glyma.09G060100 1.0kb downstream 1.0kb downstream 10718 true Chr09: 5561072-5571789 Glycine max
Glyma.09G060100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 5570790-5571789 Glycine max
Glyma.09G060100 2.0kb upstream 2.0kb upstream 11718 true Chr09: 5559072-5570789 Glycine max
Glyma.09G060100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 5559072-5561071 Glycine max
Glyma.09G060100 2.0kb downstream 2.0kb downstream 11718 true Chr09: 5561072-5572789 Glycine max
Glyma.09G060100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 5570790-5572789 Glycine max
Glyma.09G060100 5.0kb upstream 5.0kb upstream 14718 true Chr09: 5556072-5570789 Glycine max
Glyma.09G060100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 5556072-5561071 Glycine max
Glyma.09G060100 5.0kb downstream 5.0kb downstream 14718 true Chr09: 5561072-5575789 Glycine max
Glyma.09G060100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 5570790-5575789 Glycine max
Glyma.09G060100 10.0kb upstream 10.0kb upstream 19718 true Chr09: 5551072-5570789 Glycine max
Glyma.09G060100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 5551072-5561071 Glycine max
Glyma.09G060100 10.0kb downstream 10.0kb downstream 19718 true Chr09: 5561072-5580789 Glycine max
Glyma.09G060100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 5570790-5580789 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122242902 5265 Fabidae Singleton cluster - no MSA
124066259 5270 Rosid View MSA
123748643 5271 Pentapetalae View MSA
122787045 5272 Eudicot View MSA
122045949 5273 Angiosperm View MSA
121346093 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.51188 0.0 1.85576   High
cufflinks 0.523983 0.0 1.89502   High
cufflinks 0.312272 0.0 1.16003    
cufflinks 0.31009 0.0 1.15408    
cufflinks 0.108828 0.0 0.424964 Low Low
cufflinks 0.10006 0.0 0.391628 Low Low
cufflinks 0.31525 0.0 1.17531    
cufflinks 0.394167 0.0 1.44952    
cufflinks 0.169038 0.0 0.647012 Low  
cufflinks 0.13        
cufflinks 0.062       Low
cufflinks 0.305        
cufflinks 0.164        
cufflinks 0.113        
cufflinks 0.122        
cufflinks 0.396        
cufflinks 0.044     Low Low
cufflinks 0.499       High
cufflinks 0.454       High
cufflinks 0.321        
cufflinks 0.111        
cufflinks 0.386        
cufflinks 0.381        
cufflinks 0.098        
cufflinks 0.421       High
cufflinks 0.108        

0 Strain