Gene : Glyma.09G060200 G. max Wm82.a2.v1
Defline:  (1 of 309) PF00010 - Helix-loop-helix DNA-binding domain (HLH) Genomic Order:  602
Name:  ? Glyma.09G060200 Secondary Identifier:  ? PAC:30486196
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G060200 0.5kb upstream 0.5kb upstream 9276 true Chr09: 5571201-5580476 Glycine max
Glyma.09G060200 0.5kb upstream 0.5kb upstream 500 false Chr09: 5579977-5580476 Glycine max
Glyma.09G060200 0.5kb downstream 0.5kb downstream 9276 true Chr09: 5570701-5579976 Glycine max
Glyma.09G060200 0.5kb downstream 0.5kb downstream 500 false Chr09: 5570701-5571200 Glycine max
Glyma.09G060200 1.0kb upstream 1.0kb upstream 9776 true Chr09: 5571201-5580976 Glycine max
Glyma.09G060200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 5579977-5580976 Glycine max
Glyma.09G060200 1.0kb downstream 1.0kb downstream 9776 true Chr09: 5570201-5579976 Glycine max
Glyma.09G060200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 5570201-5571200 Glycine max
Glyma.09G060200 2.0kb upstream 2.0kb upstream 10776 true Chr09: 5571201-5581976 Glycine max
Glyma.09G060200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 5579977-5581976 Glycine max
Glyma.09G060200 2.0kb downstream 2.0kb downstream 10776 true Chr09: 5569201-5579976 Glycine max
Glyma.09G060200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 5569201-5571200 Glycine max
Glyma.09G060200 5.0kb upstream 5.0kb upstream 13776 true Chr09: 5571201-5584976 Glycine max
Glyma.09G060200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 5579977-5584976 Glycine max
Glyma.09G060200 5.0kb downstream 5.0kb downstream 13776 true Chr09: 5566201-5579976 Glycine max
Glyma.09G060200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 5566201-5571200 Glycine max
Glyma.09G060200 10.0kb upstream 10.0kb upstream 18776 true Chr09: 5571201-5589976 Glycine max
Glyma.09G060200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 5579977-5589976 Glycine max
Glyma.09G060200 10.0kb downstream 10.0kb downstream 18776 true Chr09: 5561201-5579976 Glycine max
Glyma.09G060200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 5561201-5571200 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305567 5265 Fabidae View MSA
124067726 5270 Rosid View MSA
123740187 5271 Pentapetalae View MSA
122797618 5272 Eudicot View MSA
122050016 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.13255 0.0 4.05012    
cufflinks 2.48785 0.0 8.23768    
cufflinks 2.78538 0.0 9.05284    
cufflinks 0.854389 0.0 3.10826   Low
cufflinks 10.714 0.0 29.5052    
cufflinks 62.376 0.0 175.083 High High
cufflinks 1.05254 0.0 3.78429    
cufflinks 3.62511 0.0 11.3496    
cufflinks 13.6928 0.0 37.0631    
cufflinks 5.413        
cufflinks 2.288        
cufflinks 1.26        
cufflinks 3.425        
cufflinks 1.438        
cufflinks 1.312        
cufflinks 0.297       Low
cufflinks 31.197     High High
cufflinks 0.823        
cufflinks 1.18        
cufflinks 0.175       Low
cufflinks 2.074        
cufflinks 0.144       Low
cufflinks 5.129        
cufflinks 1.356        
cufflinks 0.118       Low
cufflinks 10.192     High High

0 Strain