Gene : Glyma.09G090100 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR30128//PTHR30128:SF7 - OUTER MEMBRANE PROTEIN, OMPA-RELATED Genomic Order:  901
Name:  ? Glyma.09G090100 Secondary Identifier:  ? PAC:30483424
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G090100 0.5kb upstream 0.5kb upstream 1807 true Chr09: 12086976-12088782 Glycine max
Glyma.09G090100 0.5kb upstream 0.5kb upstream 500 false Chr09: 12088283-12088782 Glycine max
Glyma.09G090100 0.5kb downstream 0.5kb downstream 1807 true Chr09: 12086476-12088282 Glycine max
Glyma.09G090100 0.5kb downstream 0.5kb downstream 500 false Chr09: 12086476-12086975 Glycine max
Glyma.09G090100 1.0kb upstream 1.0kb upstream 2307 true Chr09: 12086976-12089282 Glycine max
Glyma.09G090100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 12088283-12089282 Glycine max
Glyma.09G090100 1.0kb downstream 1.0kb downstream 2307 true Chr09: 12085976-12088282 Glycine max
Glyma.09G090100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 12085976-12086975 Glycine max
Glyma.09G090100 2.0kb upstream 2.0kb upstream 3307 true Chr09: 12086976-12090282 Glycine max
Glyma.09G090100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 12088283-12090282 Glycine max
Glyma.09G090100 2.0kb downstream 2.0kb downstream 3307 true Chr09: 12084976-12088282 Glycine max
Glyma.09G090100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 12084976-12086975 Glycine max
Glyma.09G090100 5.0kb upstream 5.0kb upstream 6307 true Chr09: 12086976-12093282 Glycine max
Glyma.09G090100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 12088283-12093282 Glycine max
Glyma.09G090100 5.0kb downstream 5.0kb downstream 6307 true Chr09: 12081976-12088282 Glycine max
Glyma.09G090100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 12081976-12086975 Glycine max
Glyma.09G090100 10.0kb upstream 10.0kb upstream 11307 true Chr09: 12086976-12098282 Glycine max
Glyma.09G090100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 12088283-12098282 Glycine max
Glyma.09G090100 10.0kb downstream 10.0kb downstream 11307 true Chr09: 12076976-12088282 Glycine max
Glyma.09G090100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 12076976-12086975 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
122243250 5265 Fabidae Singleton cluster - no MSA
124074785 5270 Rosid View MSA
123753251 5271 Pentapetalae View MSA
122775013 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.47711 0.0 12.8126    
cufflinks 0.999262 0.0 3.89273    
cufflinks 1.29701 0.0 4.97921    
cufflinks 37.2671 0.0 105.807 High High
cufflinks 0.13572 0.0 0.586028 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 6.71713 0.0 23.6742    
cufflinks 0.394391 0.0 1.591    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.657       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.07     Low  
cufflinks 0.025     Low Low
cufflinks 0.023     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.44        
cufflinks 0.122        
cufflinks 0.087     Low  
cufflinks 0.913        
cufflinks 0.402        
cufflinks 0.019     Low Low
cufflinks 0.623        
cufflinks 3.741       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.407        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain