Gene : Glyma.09G087700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34195:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC Genomic Order:  877
Name:  ? Glyma.09G087700 Secondary Identifier:  ? PAC:30483664
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G087700 0.5kb upstream 0.5kb upstream 2262 true Chr09: 11469230-11471491 Glycine max
Glyma.09G087700 0.5kb upstream 0.5kb upstream 500 false Chr09: 11470992-11471491 Glycine max
Glyma.09G087700 0.5kb downstream 0.5kb downstream 2262 true Chr09: 11468730-11470991 Glycine max
Glyma.09G087700 0.5kb downstream 0.5kb downstream 500 false Chr09: 11468730-11469229 Glycine max
Glyma.09G087700 1.0kb upstream 1.0kb upstream 2762 true Chr09: 11469230-11471991 Glycine max
Glyma.09G087700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 11470992-11471991 Glycine max
Glyma.09G087700 1.0kb downstream 1.0kb downstream 2762 true Chr09: 11468230-11470991 Glycine max
Glyma.09G087700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 11468230-11469229 Glycine max
Glyma.09G087700 2.0kb upstream 2.0kb upstream 3762 true Chr09: 11469230-11472991 Glycine max
Glyma.09G087700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 11470992-11472991 Glycine max
Glyma.09G087700 2.0kb downstream 2.0kb downstream 3762 true Chr09: 11467230-11470991 Glycine max
Glyma.09G087700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 11467230-11469229 Glycine max
Glyma.09G087700 5.0kb upstream 5.0kb upstream 6762 true Chr09: 11469230-11475991 Glycine max
Glyma.09G087700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 11470992-11475991 Glycine max
Glyma.09G087700 5.0kb downstream 5.0kb downstream 6762 true Chr09: 11464230-11470991 Glycine max
Glyma.09G087700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 11464230-11469229 Glycine max
Glyma.09G087700 10.0kb upstream 10.0kb upstream 11762 true Chr09: 11469230-11480991 Glycine max
Glyma.09G087700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 11470992-11480991 Glycine max
Glyma.09G087700 10.0kb downstream 10.0kb downstream 11762 true Chr09: 11459230-11470991 Glycine max
Glyma.09G087700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 11459230-11469229 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314014 5265 Fabidae View MSA
124064022 5270 Rosid View MSA
123739111 5271 Pentapetalae View MSA
122786435 5272 Eudicot View MSA
122044551 5273 Angiosperm View MSA
121347312 5274 Embryophyte View MSA
123425033 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 270.934 0.0 853.759 High High
cufflinks 198.221 0.0 593.106 High High
cufflinks 31.5263 0.0 84.6694 High  
cufflinks 90.1678 0.0 246.403 High  
cufflinks 7.46192 0.0 23.3089   Low
cufflinks 8.41667 0.0 25.7878   Low
cufflinks 87.7462 0.0 239.328 High  
cufflinks 78.7186 0.0 213.497 High  
cufflinks 5.85401 0.0 18.8564   Low
cufflinks 25.969     High  
cufflinks 0.01     Low Low
cufflinks 17.85     High  
cufflinks 0.01     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low Low
cufflinks 128.445     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 22.338     High  
cufflinks 24.485     High  
cufflinks 157.56     High  
cufflinks 0.012     Low Low
cufflinks 153.894     High  
cufflinks 67.527     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 159.794     High  
cufflinks 0.008     Low Low

0 Strain