Gene : Glyma.09G148500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11877//PTHR11877:SF22 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE Genomic Order:  1485
Name:  ? Glyma.09G148500 Secondary Identifier:  ? PAC:30483333
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5910 Glycine max pathologic  
Gmax PWY-922 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G148500 0.5kb upstream 0.5kb upstream 6711 true Chr09: 36751795-36758505 Glycine max
Glyma.09G148500 0.5kb upstream 0.5kb upstream 500 false Chr09: 36751795-36752294 Glycine max
Glyma.09G148500 0.5kb downstream 0.5kb downstream 6711 true Chr09: 36752295-36759005 Glycine max
Glyma.09G148500 0.5kb downstream 0.5kb downstream 500 false Chr09: 36758506-36759005 Glycine max
Glyma.09G148500 1.0kb upstream 1.0kb upstream 7211 true Chr09: 36751295-36758505 Glycine max
Glyma.09G148500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 36751295-36752294 Glycine max
Glyma.09G148500 1.0kb downstream 1.0kb downstream 7211 true Chr09: 36752295-36759505 Glycine max
Glyma.09G148500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 36758506-36759505 Glycine max
Glyma.09G148500 2.0kb upstream 2.0kb upstream 8211 true Chr09: 36750295-36758505 Glycine max
Glyma.09G148500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 36750295-36752294 Glycine max
Glyma.09G148500 2.0kb downstream 2.0kb downstream 8211 true Chr09: 36752295-36760505 Glycine max
Glyma.09G148500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 36758506-36760505 Glycine max
Glyma.09G148500 5.0kb upstream 5.0kb upstream 11211 true Chr09: 36747295-36758505 Glycine max
Glyma.09G148500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 36747295-36752294 Glycine max
Glyma.09G148500 5.0kb downstream 5.0kb downstream 11211 true Chr09: 36752295-36763505 Glycine max
Glyma.09G148500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 36758506-36763505 Glycine max
Glyma.09G148500 10.0kb upstream 10.0kb upstream 16211 true Chr09: 36742295-36758505 Glycine max
Glyma.09G148500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 36742295-36752294 Glycine max
Glyma.09G148500 10.0kb downstream 10.0kb downstream 16211 true Chr09: 36752295-36768505 Glycine max
Glyma.09G148500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 36758506-36768505 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297184 5265 Fabidae View MSA
124035937 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.12722 0.0 3.89244    
cufflinks 1.65878 0.0 5.46023   High
cufflinks 0.753729 0.0 2.68217   Low
cufflinks 1.17292 0.0 4.02501    
cufflinks 0.837623 0.0 2.9692    
cufflinks 1.68484 0.0 5.54758   High
cufflinks 0.961599 0.0 3.36712    
cufflinks 1.64781 0.0 5.42069   High
cufflinks 0.709279 0.0 2.53923   Low
cufflinks 0.911        
cufflinks 0.129       Low
cufflinks 0.746        
cufflinks 0.638        
cufflinks 0.558        
cufflinks 0.102       Low
cufflinks 1.457        
cufflinks 0.598        
cufflinks 2.171       High
cufflinks 0.882        
cufflinks 1.824       High
cufflinks 0.236       Low
cufflinks 1.806       High
cufflinks 1.875       High
cufflinks 0.223       Low
cufflinks 1.691        
cufflinks 0.349        

0 Strain