Gene : Glyma.09G168800 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1688
Name:  ? Glyma.09G168800 Secondary Identifier:  ? PAC:30484095
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G168800 0.5kb upstream 0.5kb upstream 2306 true Chr09: 39356627-39358932 Glycine max
Glyma.09G168800 0.5kb upstream 0.5kb upstream 500 false Chr09: 39358433-39358932 Glycine max
Glyma.09G168800 0.5kb downstream 0.5kb downstream 2306 true Chr09: 39356127-39358432 Glycine max
Glyma.09G168800 0.5kb downstream 0.5kb downstream 500 false Chr09: 39356127-39356626 Glycine max
Glyma.09G168800 1.0kb upstream 1.0kb upstream 2806 true Chr09: 39356627-39359432 Glycine max
Glyma.09G168800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 39358433-39359432 Glycine max
Glyma.09G168800 1.0kb downstream 1.0kb downstream 2806 true Chr09: 39355627-39358432 Glycine max
Glyma.09G168800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 39355627-39356626 Glycine max
Glyma.09G168800 2.0kb upstream 2.0kb upstream 3806 true Chr09: 39356627-39360432 Glycine max
Glyma.09G168800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 39358433-39360432 Glycine max
Glyma.09G168800 2.0kb downstream 2.0kb downstream 3806 true Chr09: 39354627-39358432 Glycine max
Glyma.09G168800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 39354627-39356626 Glycine max
Glyma.09G168800 5.0kb upstream 5.0kb upstream 6806 true Chr09: 39356627-39363432 Glycine max
Glyma.09G168800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 39358433-39363432 Glycine max
Glyma.09G168800 5.0kb downstream 5.0kb downstream 6806 true Chr09: 39351627-39358432 Glycine max
Glyma.09G168800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 39351627-39356626 Glycine max
Glyma.09G168800 10.0kb upstream 10.0kb upstream 11806 true Chr09: 39356627-39368432 Glycine max
Glyma.09G168800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 39358433-39368432 Glycine max
Glyma.09G168800 10.0kb downstream 10.0kb downstream 11806 true Chr09: 39346627-39358432 Glycine max
Glyma.09G168800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 39346627-39356626 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299753 5265 Fabidae View MSA
124064804 5270 Rosid View MSA
123740477 5271 Pentapetalae View MSA
122791642 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.61262 0.0 8.14446    
cufflinks 2.24834 0.0 7.18579    
cufflinks 4.3873 0.0 12.7147    
cufflinks 3.70326 0.0 11.0046    
cufflinks 1.83828 0.0 6.02172    
cufflinks 0.750377 0.0 2.68648   Low
cufflinks 7.8286 0.0 21.4324   High
cufflinks 1.85938 0.0 6.09926    
cufflinks 1.3878 0.0 4.71568    
cufflinks 2.27        
cufflinks 2.102        
cufflinks 3.497       High
cufflinks 2.618        
cufflinks 2.981        
cufflinks 3.052        
cufflinks 2.962        
cufflinks 2.224        
cufflinks 3.848       High
cufflinks 3.126        
cufflinks 3.372        
cufflinks 1.669       Low
cufflinks 3.125        
cufflinks 2.753        
cufflinks 2.123        
cufflinks 3.265        
cufflinks 1.46       Low

0 Strain