Gene : Glyma.09G184600 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31874:SF1 - CCT MOTIF FAMILY PROTEIN-RELATED Genomic Order:  1846
Name:  ? Glyma.09G184600 Secondary Identifier:  ? PAC:30483921
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G184600 0.5kb upstream 0.5kb upstream 3038 true Chr09: 40986140-40989177 Glycine max
Glyma.09G184600 0.5kb upstream 0.5kb upstream 500 false Chr09: 40988678-40989177 Glycine max
Glyma.09G184600 0.5kb downstream 0.5kb downstream 3038 true Chr09: 40985640-40988677 Glycine max
Glyma.09G184600 0.5kb downstream 0.5kb downstream 500 false Chr09: 40985640-40986139 Glycine max
Glyma.09G184600 1.0kb upstream 1.0kb upstream 3538 true Chr09: 40986140-40989677 Glycine max
Glyma.09G184600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 40988678-40989677 Glycine max
Glyma.09G184600 1.0kb downstream 1.0kb downstream 3538 true Chr09: 40985140-40988677 Glycine max
Glyma.09G184600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 40985140-40986139 Glycine max
Glyma.09G184600 2.0kb upstream 2.0kb upstream 4538 true Chr09: 40986140-40990677 Glycine max
Glyma.09G184600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 40988678-40990677 Glycine max
Glyma.09G184600 2.0kb downstream 2.0kb downstream 4538 true Chr09: 40984140-40988677 Glycine max
Glyma.09G184600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 40984140-40986139 Glycine max
Glyma.09G184600 5.0kb upstream 5.0kb upstream 7538 true Chr09: 40986140-40993677 Glycine max
Glyma.09G184600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 40988678-40993677 Glycine max
Glyma.09G184600 5.0kb downstream 5.0kb downstream 7538 true Chr09: 40981140-40988677 Glycine max
Glyma.09G184600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 40981140-40986139 Glycine max
Glyma.09G184600 10.0kb upstream 10.0kb upstream 12538 true Chr09: 40986140-40998677 Glycine max
Glyma.09G184600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 40988678-40998677 Glycine max
Glyma.09G184600 10.0kb downstream 10.0kb downstream 12538 true Chr09: 40976140-40988677 Glycine max
Glyma.09G184600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 40976140-40986139 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122243173 5265 Fabidae Singleton cluster - no MSA
124061495 5270 Rosid View MSA
123743712 5271 Pentapetalae View MSA
122787534 5272 Eudicot View MSA
122046214 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121351074 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.9465 0.0 76.4498   High
cufflinks 2.80371 0.0 11.1944    
cufflinks 0.656714 0.0 3.80433    
cufflinks 4.26195 0.0 19.8905    
cufflinks 0.192911 0.0 0.981865 Low  
cufflinks 0.139871 0.0 0.544373 Low  
cufflinks 0.0187434 0.0 0.0852639 Low Low
cufflinks 0.984454 0.0 5.29489    
cufflinks 0.460222 0.0 2.82028    
cufflinks 0.299        
cufflinks 0.044     Low  
cufflinks 1.399        
cufflinks 0.012     Low Low
cufflinks 0.013     Low Low
cufflinks 0.348        
cufflinks 6.658       High
cufflinks 0.008     Low Low
cufflinks 1.168        
cufflinks 1.69        
cufflinks 7.023     High High
cufflinks 0.032     Low  
cufflinks 7.453     High High
cufflinks 2.474        
cufflinks 0.01     Low Low
cufflinks 11.402     High High
cufflinks 0.006     Low Low

0 Strain