Gene : Glyma.09G228500 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG4392 - RNA polymerase, subunit L Genomic Order:  2285
Name:  ? Glyma.09G228500 Secondary Identifier:  ? PAC:30482953
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G228500 0.5kb upstream 0.5kb upstream 2960 true Chr09: 45269315-45272274 Glycine max
Glyma.09G228500 0.5kb upstream 0.5kb upstream 500 false Chr09: 45271775-45272274 Glycine max
Glyma.09G228500 0.5kb downstream 0.5kb downstream 2960 true Chr09: 45268815-45271774 Glycine max
Glyma.09G228500 0.5kb downstream 0.5kb downstream 500 false Chr09: 45268815-45269314 Glycine max
Glyma.09G228500 1.0kb upstream 1.0kb upstream 3460 true Chr09: 45269315-45272774 Glycine max
Glyma.09G228500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 45271775-45272774 Glycine max
Glyma.09G228500 1.0kb downstream 1.0kb downstream 3460 true Chr09: 45268315-45271774 Glycine max
Glyma.09G228500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 45268315-45269314 Glycine max
Glyma.09G228500 2.0kb upstream 2.0kb upstream 4460 true Chr09: 45269315-45273774 Glycine max
Glyma.09G228500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 45271775-45273774 Glycine max
Glyma.09G228500 2.0kb downstream 2.0kb downstream 4460 true Chr09: 45267315-45271774 Glycine max
Glyma.09G228500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 45267315-45269314 Glycine max
Glyma.09G228500 5.0kb upstream 5.0kb upstream 7460 true Chr09: 45269315-45276774 Glycine max
Glyma.09G228500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 45271775-45276774 Glycine max
Glyma.09G228500 5.0kb downstream 5.0kb downstream 7460 true Chr09: 45264315-45271774 Glycine max
Glyma.09G228500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 45264315-45269314 Glycine max
Glyma.09G228500 10.0kb upstream 10.0kb upstream 12460 true Chr09: 45269315-45281774 Glycine max
Glyma.09G228500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 45271775-45281774 Glycine max
Glyma.09G228500 10.0kb downstream 10.0kb downstream 12460 true Chr09: 45259315-45271774 Glycine max
Glyma.09G228500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 45259315-45269314 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300598 5265 Fabidae View MSA
124064272 5270 Rosid View MSA
123749269 5271 Pentapetalae View MSA
122790811 5272 Eudicot View MSA
122043921 5273 Angiosperm View MSA
121349469 5274 Embryophyte View MSA
123424853 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.56267 0.0 25.7586   Low
cufflinks 24.7285 0.0 66.8352 High High
cufflinks 8.87698 0.0 26.4619   Low
cufflinks 11.777 0.0 33.9395    
cufflinks 14.4003 0.0 40.5743    
cufflinks 15.279 0.0 42.7652    
cufflinks 16.3314 0.0 45.4923    
cufflinks 20.8132 0.0 56.821   High
cufflinks 14.2814 0.0 40.2652    
cufflinks 4.854        
cufflinks 0.962       Low
cufflinks 4.334        
cufflinks 5.434        
cufflinks 7.248     High High
cufflinks 1.699       Low
cufflinks 4.209        
cufflinks 2.093        
cufflinks 4.894        
cufflinks 7.993     High High
cufflinks 3.76        
cufflinks 1.609       Low
cufflinks 4.049        
cufflinks 4.821        
cufflinks 1.259       Low
cufflinks 3.605        
cufflinks 2.026        

0 Strain