Gene : Glyma.09G222800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10108:SF708 - TOCOPHEROL O-METHYLTRANSFERASE, CHLOROPLASTIC Genomic Order:  2228
Name:  ? Glyma.09G222800 Secondary Identifier:  ? PAC:30484771
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1422 Glycine max pathologic  
Gmax PWY-7436 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G222800 0.5kb upstream 0.5kb upstream 4838 true Chr09: 44341474-44346311 Glycine max
Glyma.09G222800 0.5kb upstream 0.5kb upstream 500 false Chr09: 44341474-44341973 Glycine max
Glyma.09G222800 0.5kb downstream 0.5kb downstream 4838 true Chr09: 44341974-44346811 Glycine max
Glyma.09G222800 0.5kb downstream 0.5kb downstream 500 false Chr09: 44346312-44346811 Glycine max
Glyma.09G222800 1.0kb upstream 1.0kb upstream 5338 true Chr09: 44340974-44346311 Glycine max
Glyma.09G222800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 44340974-44341973 Glycine max
Glyma.09G222800 1.0kb downstream 1.0kb downstream 5338 true Chr09: 44341974-44347311 Glycine max
Glyma.09G222800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 44346312-44347311 Glycine max
Glyma.09G222800 2.0kb upstream 2.0kb upstream 6338 true Chr09: 44339974-44346311 Glycine max
Glyma.09G222800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 44339974-44341973 Glycine max
Glyma.09G222800 2.0kb downstream 2.0kb downstream 6338 true Chr09: 44341974-44348311 Glycine max
Glyma.09G222800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 44346312-44348311 Glycine max
Glyma.09G222800 5.0kb upstream 5.0kb upstream 9338 true Chr09: 44336974-44346311 Glycine max
Glyma.09G222800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 44336974-44341973 Glycine max
Glyma.09G222800 5.0kb downstream 5.0kb downstream 9338 true Chr09: 44341974-44351311 Glycine max
Glyma.09G222800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 44346312-44351311 Glycine max
Glyma.09G222800 10.0kb upstream 10.0kb upstream 14338 true Chr09: 44331974-44346311 Glycine max
Glyma.09G222800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 44331974-44341973 Glycine max
Glyma.09G222800 10.0kb downstream 10.0kb downstream 14338 true Chr09: 44341974-44356311 Glycine max
Glyma.09G222800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 44346312-44356311 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299089 5265 Fabidae View MSA
124067151 5270 Rosid View MSA
123747323 5271 Pentapetalae View MSA
122786433 5272 Eudicot View MSA
122044817 5273 Angiosperm View MSA
121347406 5274 Embryophyte View MSA
123427925 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.55556 0.0 8.64444   Low
cufflinks 3.03604 0.0 10.0611    
cufflinks 5.86964 0.0 17.6833    
cufflinks 40.7001 0.0 109.257 High High
cufflinks 18.7135 0.0 50.3703    
cufflinks 17.3452 0.0 46.8404    
cufflinks 1.91795 0.0 6.67871   Low
cufflinks 27.3693 0.0 73.0236 High  
cufflinks 14.6144 0.0 39.8791    
cufflinks 6.894        
cufflinks 12.599     High High
cufflinks 1.533        
cufflinks 4.649        
cufflinks 4.48        
cufflinks 3.262        
cufflinks 0.971       Low
cufflinks 5.398        
cufflinks 5.095        
cufflinks 1.588        
cufflinks 0.649       Low
cufflinks 7.091     High  
cufflinks 0.989       Low
cufflinks 0.95       Low
cufflinks 13.017     High High
cufflinks 0.956       Low
cufflinks 6.747     High  

0 Strain