Gene : Glyma.10G012900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR33921:SF2 - CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED Genomic Order:  129
Name:  ? Glyma.10G012900 Secondary Identifier:  ? PAC:30477337
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G012900 0.5kb upstream 0.5kb upstream 1948 true Chr10: 1168415-1170362 Glycine max
Glyma.10G012900 0.5kb upstream 0.5kb upstream 500 false Chr10: 1168415-1168914 Glycine max
Glyma.10G012900 0.5kb downstream 0.5kb downstream 1948 true Chr10: 1168915-1170862 Glycine max
Glyma.10G012900 0.5kb downstream 0.5kb downstream 500 false Chr10: 1170363-1170862 Glycine max
Glyma.10G012900 1.0kb upstream 1.0kb upstream 2448 true Chr10: 1167915-1170362 Glycine max
Glyma.10G012900 1.0kb upstream 1.0kb upstream 1000 false Chr10: 1167915-1168914 Glycine max
Glyma.10G012900 1.0kb downstream 1.0kb downstream 2448 true Chr10: 1168915-1171362 Glycine max
Glyma.10G012900 1.0kb downstream 1.0kb downstream 1000 false Chr10: 1170363-1171362 Glycine max
Glyma.10G012900 2.0kb upstream 2.0kb upstream 3448 true Chr10: 1166915-1170362 Glycine max
Glyma.10G012900 2.0kb upstream 2.0kb upstream 2000 false Chr10: 1166915-1168914 Glycine max
Glyma.10G012900 2.0kb downstream 2.0kb downstream 3448 true Chr10: 1168915-1172362 Glycine max
Glyma.10G012900 2.0kb downstream 2.0kb downstream 2000 false Chr10: 1170363-1172362 Glycine max
Glyma.10G012900 5.0kb upstream 5.0kb upstream 6448 true Chr10: 1163915-1170362 Glycine max
Glyma.10G012900 5.0kb upstream 5.0kb upstream 5000 false Chr10: 1163915-1168914 Glycine max
Glyma.10G012900 5.0kb downstream 5.0kb downstream 6448 true Chr10: 1168915-1175362 Glycine max
Glyma.10G012900 5.0kb downstream 5.0kb downstream 5000 false Chr10: 1170363-1175362 Glycine max
Glyma.10G012900 10.0kb upstream 10.0kb upstream 11448 true Chr10: 1158915-1170362 Glycine max
Glyma.10G012900 10.0kb upstream 10.0kb upstream 10000 false Chr10: 1158915-1168914 Glycine max
Glyma.10G012900 10.0kb downstream 10.0kb downstream 11448 true Chr10: 1168915-1180362 Glycine max
Glyma.10G012900 10.0kb downstream 10.0kb downstream 10000 false Chr10: 1170363-1180362 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298035 5265 Fabidae View MSA
124070241 5270 Rosid View MSA
123742696 5271 Pentapetalae View MSA
122795504 5272 Eudicot View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 318.673 0.0 1189.54 High High
cufflinks 25.7587 0.0 68.7252 High  
cufflinks 66.1457 0.0 184.817 High  
cufflinks 22.5881 0.0 60.3229 High  
cufflinks 0.850387 0.0 3.11338   Low
cufflinks 0.365238 0.0 1.39334   Low
cufflinks 12.2798 0.0 33.7349    
cufflinks 49.3815 0.0 134.375 High  
cufflinks 2.04666 0.0 7.02553    
cufflinks 2.675        
cufflinks 0.298        
cufflinks 26.343     High  
cufflinks 0.053     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.081       Low
cufflinks 29.535     High  
cufflinks 0.668        
cufflinks 12.269     High  
cufflinks 3.72        
cufflinks 61.962     High High
cufflinks 0.058     Low Low
cufflinks 55.962     High High
cufflinks 36.818     High High
cufflinks 0.145        
cufflinks 43.89     High High
cufflinks 0.06     Low Low

0 Strain