Gene : Glyma.10G042100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR34549:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED Genomic Order:  421
Name:  ? Glyma.10G042100 Secondary Identifier:  ? PAC:30476861
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G042100 0.5kb upstream 0.5kb upstream 2226 true Chr10: 3759094-3761319 Glycine max
Glyma.10G042100 0.5kb upstream 0.5kb upstream 500 false Chr10: 3760820-3761319 Glycine max
Glyma.10G042100 0.5kb downstream 0.5kb downstream 2226 true Chr10: 3758594-3760819 Glycine max
Glyma.10G042100 0.5kb downstream 0.5kb downstream 500 false Chr10: 3758594-3759093 Glycine max
Glyma.10G042100 1.0kb upstream 1.0kb upstream 2726 true Chr10: 3759094-3761819 Glycine max
Glyma.10G042100 1.0kb upstream 1.0kb upstream 1000 false Chr10: 3760820-3761819 Glycine max
Glyma.10G042100 1.0kb downstream 1.0kb downstream 2726 true Chr10: 3758094-3760819 Glycine max
Glyma.10G042100 1.0kb downstream 1.0kb downstream 1000 false Chr10: 3758094-3759093 Glycine max
Glyma.10G042100 2.0kb upstream 2.0kb upstream 3726 true Chr10: 3759094-3762819 Glycine max
Glyma.10G042100 2.0kb upstream 2.0kb upstream 2000 false Chr10: 3760820-3762819 Glycine max
Glyma.10G042100 2.0kb downstream 2.0kb downstream 3726 true Chr10: 3757094-3760819 Glycine max
Glyma.10G042100 2.0kb downstream 2.0kb downstream 2000 false Chr10: 3757094-3759093 Glycine max
Glyma.10G042100 5.0kb upstream 5.0kb upstream 6726 true Chr10: 3759094-3765819 Glycine max
Glyma.10G042100 5.0kb upstream 5.0kb upstream 5000 false Chr10: 3760820-3765819 Glycine max
Glyma.10G042100 5.0kb downstream 5.0kb downstream 6726 true Chr10: 3754094-3760819 Glycine max
Glyma.10G042100 5.0kb downstream 5.0kb downstream 5000 false Chr10: 3754094-3759093 Glycine max
Glyma.10G042100 10.0kb upstream 10.0kb upstream 11726 true Chr10: 3759094-3770819 Glycine max
Glyma.10G042100 10.0kb upstream 10.0kb upstream 10000 false Chr10: 3760820-3770819 Glycine max
Glyma.10G042100 10.0kb downstream 10.0kb downstream 11726 true Chr10: 3749094-3760819 Glycine max
Glyma.10G042100 10.0kb downstream 10.0kb downstream 10000 false Chr10: 3749094-3759093 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304273 5265 Fabidae View MSA
124068589 5270 Rosid View MSA
123747276 5271 Pentapetalae View MSA
122791001 5272 Eudicot View MSA
122047877 5273 Angiosperm View MSA
121348572 5274 Embryophyte View MSA
123426677 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 146.599 0.0 434.614 High High
cufflinks 99.9545 0.0 282.136 High  
cufflinks 61.4559 0.0 166.535 High  
cufflinks 54.4 0.0 146.534 High  
cufflinks 9.35355 0.0 27.2863   Low
cufflinks 9.4043 0.0 27.4531   Low
cufflinks 46.8431 0.0 125.475 High  
cufflinks 47.826 0.0 128.253 High  
cufflinks 10.461 0.0 30.0664   Low
cufflinks 40.165     High  
cufflinks 4.132        
cufflinks 39.487     High  
cufflinks 0.458       Low
cufflinks 0.26       Low
cufflinks 3.586        
cufflinks 163.638     High High
cufflinks 0.572       Low
cufflinks 35.831     High  
cufflinks 56.694     High  
cufflinks 226.649     High High
cufflinks 3.273        
cufflinks 206.143     High High
cufflinks 111.528     High  
cufflinks 4.955        
cufflinks 201.814     High High
cufflinks 0.791       Low

0 Strain