Gene : Glyma.10G042400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR19282:SF227 - TETRASPANIN-18-RELATED Genomic Order:  424
Name:  ? Glyma.10G042400 Secondary Identifier:  ? PAC:30476606
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G042400 0.5kb upstream 0.5kb upstream 5502 true Chr10: 3778188-3783689 Glycine max
Glyma.10G042400 0.5kb upstream 0.5kb upstream 500 false Chr10: 3783190-3783689 Glycine max
Glyma.10G042400 0.5kb downstream 0.5kb downstream 5502 true Chr10: 3777688-3783189 Glycine max
Glyma.10G042400 0.5kb downstream 0.5kb downstream 500 false Chr10: 3777688-3778187 Glycine max
Glyma.10G042400 1.0kb upstream 1.0kb upstream 6002 true Chr10: 3778188-3784189 Glycine max
Glyma.10G042400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 3783190-3784189 Glycine max
Glyma.10G042400 1.0kb downstream 1.0kb downstream 6002 true Chr10: 3777188-3783189 Glycine max
Glyma.10G042400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 3777188-3778187 Glycine max
Glyma.10G042400 2.0kb upstream 2.0kb upstream 7002 true Chr10: 3778188-3785189 Glycine max
Glyma.10G042400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 3783190-3785189 Glycine max
Glyma.10G042400 2.0kb downstream 2.0kb downstream 7002 true Chr10: 3776188-3783189 Glycine max
Glyma.10G042400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 3776188-3778187 Glycine max
Glyma.10G042400 5.0kb upstream 5.0kb upstream 10002 true Chr10: 3778188-3788189 Glycine max
Glyma.10G042400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 3783190-3788189 Glycine max
Glyma.10G042400 5.0kb downstream 5.0kb downstream 10002 true Chr10: 3773188-3783189 Glycine max
Glyma.10G042400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 3773188-3778187 Glycine max
Glyma.10G042400 10.0kb upstream 10.0kb upstream 15002 true Chr10: 3778188-3793189 Glycine max
Glyma.10G042400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 3783190-3793189 Glycine max
Glyma.10G042400 10.0kb downstream 10.0kb downstream 15002 true Chr10: 3768188-3783189 Glycine max
Glyma.10G042400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 3768188-3778187 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303734 5265 Fabidae View MSA
124063640 5270 Rosid View MSA
123743956 5271 Pentapetalae View MSA
122796943 5272 Eudicot View MSA
122050104 5273 Angiosperm View MSA
121351335 5274 Embryophyte View MSA
123424447 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.5573 0.0 59.3228    
cufflinks 7.7085 0.0 40.9923   Low
cufflinks 9.39725 0.0 47.2792    
cufflinks 12.616 0.0 65.9013    
cufflinks 10.1132 0.0 48.8004    
cufflinks 12.8935 0.0 60.241    
cufflinks 8.25147 0.0 44.4869   Low
cufflinks 16.4039 0.0 74.1731   High
cufflinks 9.31633 0.0 47.7106    
cufflinks 3.429        
cufflinks 0.88       Low
cufflinks 3.656        
cufflinks 2.617        
cufflinks 2.962        
cufflinks 1.082       Low
cufflinks 2.886        
cufflinks 1.459        
cufflinks 8.384     High High
cufflinks 2.328        
cufflinks 3.164        
cufflinks 1.198       Low
cufflinks 3.53        
cufflinks 3.109        
cufflinks 1.137       Low
cufflinks 3.266        
cufflinks 1.658        

0 Strain