Gene : Glyma.10G138800 G. max Wm82.a2.v1
Defline:  (1 of 9) PTHR12565:SF178 - TRANSCRIPTION FACTOR PIF3 Genomic Order:  1388
Name:  ? Glyma.10G138800 Secondary Identifier:  ? PAC:30473953
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G138800 0.5kb upstream 0.5kb upstream 3078 true Chr10: 37244847-37247924 Glycine max
Glyma.10G138800 0.5kb upstream 0.5kb upstream 500 false Chr10: 37244847-37245346 Glycine max
Glyma.10G138800 0.5kb downstream 0.5kb downstream 3078 true Chr10: 37245347-37248424 Glycine max
Glyma.10G138800 0.5kb downstream 0.5kb downstream 500 false Chr10: 37247925-37248424 Glycine max
Glyma.10G138800 1.0kb upstream 1.0kb upstream 3578 true Chr10: 37244347-37247924 Glycine max
Glyma.10G138800 1.0kb upstream 1.0kb upstream 1000 false Chr10: 37244347-37245346 Glycine max
Glyma.10G138800 1.0kb downstream 1.0kb downstream 3578 true Chr10: 37245347-37248924 Glycine max
Glyma.10G138800 1.0kb downstream 1.0kb downstream 1000 false Chr10: 37247925-37248924 Glycine max
Glyma.10G138800 2.0kb upstream 2.0kb upstream 4578 true Chr10: 37243347-37247924 Glycine max
Glyma.10G138800 2.0kb upstream 2.0kb upstream 2000 false Chr10: 37243347-37245346 Glycine max
Glyma.10G138800 2.0kb downstream 2.0kb downstream 4578 true Chr10: 37245347-37249924 Glycine max
Glyma.10G138800 2.0kb downstream 2.0kb downstream 2000 false Chr10: 37247925-37249924 Glycine max
Glyma.10G138800 5.0kb upstream 5.0kb upstream 7578 true Chr10: 37240347-37247924 Glycine max
Glyma.10G138800 5.0kb upstream 5.0kb upstream 5000 false Chr10: 37240347-37245346 Glycine max
Glyma.10G138800 5.0kb downstream 5.0kb downstream 7578 true Chr10: 37245347-37252924 Glycine max
Glyma.10G138800 5.0kb downstream 5.0kb downstream 5000 false Chr10: 37247925-37252924 Glycine max
Glyma.10G138800 10.0kb upstream 10.0kb upstream 12578 true Chr10: 37235347-37247924 Glycine max
Glyma.10G138800 10.0kb upstream 10.0kb upstream 10000 false Chr10: 37235347-37245346 Glycine max
Glyma.10G138800 10.0kb downstream 10.0kb downstream 12578 true Chr10: 37245347-37257924 Glycine max
Glyma.10G138800 10.0kb downstream 10.0kb downstream 10000 false Chr10: 37247925-37257924 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122244589 5265 Fabidae Singleton cluster - no MSA
124075094 5270 Rosid View MSA
123752650 5271 Pentapetalae View MSA
122774700 5272 Eudicot View MSA
122048181 5273 Angiosperm View MSA
121348763 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.2442 0.0 99.8096 High High
cufflinks 6.41211 0.0 24.2485   High
cufflinks 0.676735 0.0 4.89603    
cufflinks 0.314555 0.0 2.03899    
cufflinks 0.552763 0.0 3.34898    
cufflinks 0.165334 0.0 0.811105 Low  
cufflinks 0.0307352 0.0 0.13317 Low Low
cufflinks 0.422887 0.0 2.02179    
cufflinks 0.38843 0.0 2.46764    
cufflinks 0.269        
cufflinks 0.028     Low  
cufflinks 0.422        
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.067        
cufflinks 3.573       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.189        
cufflinks 0.134        
cufflinks 3.325       High
cufflinks 0.044     Low  
cufflinks 2.549       High
cufflinks 1.137        
cufflinks 0.01     Low Low
cufflinks 3.229       High
cufflinks 0.045     Low  

0 Strain