Gene : Glyma.10G128400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31332:SF0 - 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC Genomic Order:  1284
Name:  ? Glyma.10G128400 Secondary Identifier:  ? PAC:30476499
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5068 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G128400 0.5kb upstream 0.5kb upstream 12832 true Chr10: 34145557-34158388 Glycine max
Glyma.10G128400 0.5kb upstream 0.5kb upstream 500 false Chr10: 34145557-34146056 Glycine max
Glyma.10G128400 0.5kb downstream 0.5kb downstream 12832 true Chr10: 34146057-34158888 Glycine max
Glyma.10G128400 0.5kb downstream 0.5kb downstream 500 false Chr10: 34158389-34158888 Glycine max
Glyma.10G128400 1.0kb upstream 1.0kb upstream 13332 true Chr10: 34145057-34158388 Glycine max
Glyma.10G128400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 34145057-34146056 Glycine max
Glyma.10G128400 1.0kb downstream 1.0kb downstream 13332 true Chr10: 34146057-34159388 Glycine max
Glyma.10G128400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 34158389-34159388 Glycine max
Glyma.10G128400 2.0kb upstream 2.0kb upstream 14332 true Chr10: 34144057-34158388 Glycine max
Glyma.10G128400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 34144057-34146056 Glycine max
Glyma.10G128400 2.0kb downstream 2.0kb downstream 14332 true Chr10: 34146057-34160388 Glycine max
Glyma.10G128400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 34158389-34160388 Glycine max
Glyma.10G128400 5.0kb upstream 5.0kb upstream 17332 true Chr10: 34141057-34158388 Glycine max
Glyma.10G128400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 34141057-34146056 Glycine max
Glyma.10G128400 5.0kb downstream 5.0kb downstream 17332 true Chr10: 34146057-34163388 Glycine max
Glyma.10G128400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 34158389-34163388 Glycine max
Glyma.10G128400 10.0kb upstream 10.0kb upstream 22332 true Chr10: 34136057-34158388 Glycine max
Glyma.10G128400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 34136057-34146056 Glycine max
Glyma.10G128400 10.0kb downstream 10.0kb downstream 22332 true Chr10: 34146057-34168388 Glycine max
Glyma.10G128400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 34158389-34168388 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308112 5265 Fabidae View MSA
124061681 5270 Rosid View MSA
123745545 5271 Pentapetalae View MSA
122786931 5272 Eudicot View MSA
122042244 5273 Angiosperm View MSA
121347616 5274 Embryophyte View MSA
123428400 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.2288 0.0 157.888 High High
cufflinks 18.1579 0.0 62.0135    
cufflinks 67.2131 0.0 384.07 High High
cufflinks 12.9951 0.0 53.8218    
cufflinks 3.27129 0.0 13.5441   Low
cufflinks 4.88534 0.0 17.6516    
cufflinks 6.45492 0.0 24.9956    
cufflinks 16.5847 0.0 81.0271    
cufflinks 4.22803 0.0 15.7955    
cufflinks 0.638        
cufflinks 0.043     Low Low
cufflinks 2.06       High
cufflinks 0.061     Low Low
cufflinks 0.044     Low Low
cufflinks 0.25        
cufflinks 1.423        
cufflinks 0.182        
cufflinks 1.023        
cufflinks 0.749        
cufflinks 2.184       High
cufflinks 0.071       Low
cufflinks 2.037       High
cufflinks 1.687        
cufflinks 0.055     Low Low
cufflinks 1.854       High
cufflinks 0.061     Low Low

0 Strain