Gene : Glyma.10G193000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12856 - TRANSCRIPTION INITIATION FACTOR IIH-RELATED Genomic Order:  1930
Name:  ? Glyma.10G193000 Secondary Identifier:  ? PAC:30476492
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G193000 0.5kb upstream 0.5kb upstream 13191 true Chr10: 42527991-42541181 Glycine max
Glyma.10G193000 0.5kb upstream 0.5kb upstream 500 false Chr10: 42540682-42541181 Glycine max
Glyma.10G193000 0.5kb downstream 0.5kb downstream 13191 true Chr10: 42527491-42540681 Glycine max
Glyma.10G193000 0.5kb downstream 0.5kb downstream 500 false Chr10: 42527491-42527990 Glycine max
Glyma.10G193000 1.0kb upstream 1.0kb upstream 13691 true Chr10: 42527991-42541681 Glycine max
Glyma.10G193000 1.0kb upstream 1.0kb upstream 1000 false Chr10: 42540682-42541681 Glycine max
Glyma.10G193000 1.0kb downstream 1.0kb downstream 13691 true Chr10: 42526991-42540681 Glycine max
Glyma.10G193000 1.0kb downstream 1.0kb downstream 1000 false Chr10: 42526991-42527990 Glycine max
Glyma.10G193000 2.0kb upstream 2.0kb upstream 14691 true Chr10: 42527991-42542681 Glycine max
Glyma.10G193000 2.0kb upstream 2.0kb upstream 2000 false Chr10: 42540682-42542681 Glycine max
Glyma.10G193000 2.0kb downstream 2.0kb downstream 14691 true Chr10: 42525991-42540681 Glycine max
Glyma.10G193000 2.0kb downstream 2.0kb downstream 2000 false Chr10: 42525991-42527990 Glycine max
Glyma.10G193000 5.0kb upstream 5.0kb upstream 17691 true Chr10: 42527991-42545681 Glycine max
Glyma.10G193000 5.0kb upstream 5.0kb upstream 5000 false Chr10: 42540682-42545681 Glycine max
Glyma.10G193000 5.0kb downstream 5.0kb downstream 17691 true Chr10: 42522991-42540681 Glycine max
Glyma.10G193000 5.0kb downstream 5.0kb downstream 5000 false Chr10: 42522991-42527990 Glycine max
Glyma.10G193000 10.0kb upstream 10.0kb upstream 22691 true Chr10: 42527991-42550681 Glycine max
Glyma.10G193000 10.0kb upstream 10.0kb upstream 10000 false Chr10: 42540682-42550681 Glycine max
Glyma.10G193000 10.0kb downstream 10.0kb downstream 22691 true Chr10: 42517991-42540681 Glycine max
Glyma.10G193000 10.0kb downstream 10.0kb downstream 10000 false Chr10: 42517991-42527990 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299700 5265 Fabidae View MSA
124068692 5270 Rosid View MSA
123738244 5271 Pentapetalae View MSA
122787782 5272 Eudicot View MSA
122047682 5273 Angiosperm View MSA
121347472 5274 Embryophyte View MSA
123425427 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.06498 0.0 25.5154    
cufflinks 4.25338 0.0 19.3326   Low
cufflinks 5.45071 0.0 29.0183    
cufflinks 5.05247 0.0 21.6669    
cufflinks 6.81274 0.0 36.6851   High
cufflinks 5.38283 0.0 24.6577    
cufflinks 6.06266 0.0 25.3135    
cufflinks 4.97894 0.0 21.1608    
cufflinks 5.46346 0.0 26.7922    
cufflinks 0.104        
cufflinks 0.1        
cufflinks 0.137        
cufflinks 0.154       High
cufflinks 0.197       High
cufflinks 0.105        
cufflinks 0.106        
cufflinks 0.111        
cufflinks 0.136        
cufflinks 0.11        
cufflinks 0.112        
cufflinks 0.108        
cufflinks 0.096       Low
cufflinks 0.115        
cufflinks 0.126        
cufflinks 0.101        
cufflinks 0.105        

0 Strain