Gene : Glyma.10G249300 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR34798:SF2 - PROTEIN TIME FOR COFFEE Genomic Order:  2493
Name:  ? Glyma.10G249300 Secondary Identifier:  ? PAC:30475017
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G249300 0.5kb upstream 0.5kb upstream 7169 true Chr10: 47746989-47754157 Glycine max
Glyma.10G249300 0.5kb upstream 0.5kb upstream 500 false Chr10: 47753658-47754157 Glycine max
Glyma.10G249300 0.5kb downstream 0.5kb downstream 7169 true Chr10: 47746489-47753657 Glycine max
Glyma.10G249300 0.5kb downstream 0.5kb downstream 500 false Chr10: 47746489-47746988 Glycine max
Glyma.10G249300 1.0kb upstream 1.0kb upstream 7669 true Chr10: 47746989-47754657 Glycine max
Glyma.10G249300 1.0kb upstream 1.0kb upstream 1000 false Chr10: 47753658-47754657 Glycine max
Glyma.10G249300 1.0kb downstream 1.0kb downstream 7669 true Chr10: 47745989-47753657 Glycine max
Glyma.10G249300 1.0kb downstream 1.0kb downstream 1000 false Chr10: 47745989-47746988 Glycine max
Glyma.10G249300 2.0kb upstream 2.0kb upstream 8669 true Chr10: 47746989-47755657 Glycine max
Glyma.10G249300 2.0kb upstream 2.0kb upstream 2000 false Chr10: 47753658-47755657 Glycine max
Glyma.10G249300 2.0kb downstream 2.0kb downstream 8669 true Chr10: 47744989-47753657 Glycine max
Glyma.10G249300 2.0kb downstream 2.0kb downstream 2000 false Chr10: 47744989-47746988 Glycine max
Glyma.10G249300 5.0kb upstream 5.0kb upstream 11669 true Chr10: 47746989-47758657 Glycine max
Glyma.10G249300 5.0kb upstream 5.0kb upstream 5000 false Chr10: 47753658-47758657 Glycine max
Glyma.10G249300 5.0kb downstream 5.0kb downstream 11669 true Chr10: 47741989-47753657 Glycine max
Glyma.10G249300 5.0kb downstream 5.0kb downstream 5000 false Chr10: 47741989-47746988 Glycine max
Glyma.10G249300 10.0kb upstream 10.0kb upstream 16669 true Chr10: 47746989-47763657 Glycine max
Glyma.10G249300 10.0kb upstream 10.0kb upstream 10000 false Chr10: 47753658-47763657 Glycine max
Glyma.10G249300 10.0kb downstream 10.0kb downstream 16669 true Chr10: 47736989-47753657 Glycine max
Glyma.10G249300 10.0kb downstream 10.0kb downstream 10000 false Chr10: 47736989-47746988 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299656 5265 Fabidae View MSA
124068885 5270 Rosid View MSA
123740436 5271 Pentapetalae View MSA
122788537 5272 Eudicot View MSA
122049796 5273 Angiosperm View MSA
121350697 5274 Embryophyte View MSA
123381850 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.9049 0.0 106.523   High
cufflinks 13.8122 0.0 60.7445    
cufflinks 20.0268 0.0 99.1629   High
cufflinks 15.7928 0.0 72.6586    
cufflinks 12.3856 0.0 53.5975    
cufflinks 9.05254 0.0 36.349   Low
cufflinks 20.2084 0.0 101.557   High
cufflinks 15.6077 0.0 71.7218    
cufflinks 9.97619 0.0 40.9556   Low
cufflinks 2.828        
cufflinks 2.745        
cufflinks 4.417        
cufflinks 2.56        
cufflinks 2.428        
cufflinks 1.789       Low
cufflinks 5.089       High
cufflinks 2.284       Low
cufflinks 4.477        
cufflinks 4.407        
cufflinks 4.917       High
cufflinks 2.116       Low
cufflinks 5.314       High
cufflinks 5.382       High
cufflinks 3.883        
cufflinks 4.258        
cufflinks 2.425        

0 Strain