Gene : Glyma.10G223300 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR24012:SF376 - POLYPYRIMIDINE TRACT-BINDING PROTEIN 3 Genomic Order:  2233
Name:  ? Glyma.10G223300 Secondary Identifier:  ? PAC:30476173
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G223300 0.5kb upstream 0.5kb upstream 8810 true Chr10: 45430584-45439393 Glycine max
Glyma.10G223300 0.5kb upstream 0.5kb upstream 500 false Chr10: 45438894-45439393 Glycine max
Glyma.10G223300 0.5kb downstream 0.5kb downstream 8810 true Chr10: 45430084-45438893 Glycine max
Glyma.10G223300 0.5kb downstream 0.5kb downstream 500 false Chr10: 45430084-45430583 Glycine max
Glyma.10G223300 1.0kb upstream 1.0kb upstream 9310 true Chr10: 45430584-45439893 Glycine max
Glyma.10G223300 1.0kb upstream 1.0kb upstream 1000 false Chr10: 45438894-45439893 Glycine max
Glyma.10G223300 1.0kb downstream 1.0kb downstream 9310 true Chr10: 45429584-45438893 Glycine max
Glyma.10G223300 1.0kb downstream 1.0kb downstream 1000 false Chr10: 45429584-45430583 Glycine max
Glyma.10G223300 2.0kb upstream 2.0kb upstream 10310 true Chr10: 45430584-45440893 Glycine max
Glyma.10G223300 2.0kb upstream 2.0kb upstream 2000 false Chr10: 45438894-45440893 Glycine max
Glyma.10G223300 2.0kb downstream 2.0kb downstream 10310 true Chr10: 45428584-45438893 Glycine max
Glyma.10G223300 2.0kb downstream 2.0kb downstream 2000 false Chr10: 45428584-45430583 Glycine max
Glyma.10G223300 5.0kb upstream 5.0kb upstream 13310 true Chr10: 45430584-45443893 Glycine max
Glyma.10G223300 5.0kb upstream 5.0kb upstream 5000 false Chr10: 45438894-45443893 Glycine max
Glyma.10G223300 5.0kb downstream 5.0kb downstream 13310 true Chr10: 45425584-45438893 Glycine max
Glyma.10G223300 5.0kb downstream 5.0kb downstream 5000 false Chr10: 45425584-45430583 Glycine max
Glyma.10G223300 10.0kb upstream 10.0kb upstream 18310 true Chr10: 45430584-45448893 Glycine max
Glyma.10G223300 10.0kb upstream 10.0kb upstream 10000 false Chr10: 45438894-45448893 Glycine max
Glyma.10G223300 10.0kb downstream 10.0kb downstream 18310 true Chr10: 45420584-45438893 Glycine max
Glyma.10G223300 10.0kb downstream 10.0kb downstream 10000 false Chr10: 45420584-45430583 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121609153 5273 Angiosperm Singleton cluster - no MSA
122241274 5265 Fabidae Singleton cluster - no MSA
123986171 5270 Rosid Singleton cluster - no MSA
123561539 5271 Pentapetalae Singleton cluster - no MSA
122596327 5272 Eudicot Singleton cluster - no MSA
120881413 5274 Embryophyte Singleton cluster - no MSA
122922267 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.79364 0.0 34.4598    
cufflinks 7.35478 0.0 30.0352    
cufflinks 14.8963 0.0 56.2843   High
cufflinks 6.6362 0.0 24.6396    
cufflinks 3.75082 0.0 18.3113   Low
cufflinks 18.6385 0.0 70.4689   High
cufflinks 6.23315 0.0 26.5243    
cufflinks 4.68433 0.0 18.9242    
cufflinks 6.69806 0.0 25.0148    
cufflinks 0.221       Low
cufflinks 0.648        
cufflinks 0.547        
cufflinks 0.225       Low
cufflinks 0.178       Low
cufflinks 0.62        
cufflinks 0.522        
cufflinks 0.169       Low
cufflinks 0.239        
cufflinks 0.389        
cufflinks 0.859       High
cufflinks 0.391        
cufflinks 0.575        
cufflinks 0.35        
cufflinks 0.52        
cufflinks 0.717       High
cufflinks 0.212       Low

0 Strain