Gene : Glyma.11G015900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13452:SF10 - THUMP DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  159
Name:  ? Glyma.11G015900 Secondary Identifier:  ? PAC:30529315
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G015900 0.5kb upstream 0.5kb upstream 5335 true Chr11: 1112588-1117922 Glycine max
Glyma.11G015900 0.5kb upstream 0.5kb upstream 500 false Chr11: 1112588-1113087 Glycine max
Glyma.11G015900 0.5kb downstream 0.5kb downstream 5335 true Chr11: 1113088-1118422 Glycine max
Glyma.11G015900 0.5kb downstream 0.5kb downstream 500 false Chr11: 1117923-1118422 Glycine max
Glyma.11G015900 1.0kb upstream 1.0kb upstream 5835 true Chr11: 1112088-1117922 Glycine max
Glyma.11G015900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1112088-1113087 Glycine max
Glyma.11G015900 1.0kb downstream 1.0kb downstream 5835 true Chr11: 1113088-1118922 Glycine max
Glyma.11G015900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1117923-1118922 Glycine max
Glyma.11G015900 2.0kb upstream 2.0kb upstream 6835 true Chr11: 1111088-1117922 Glycine max
Glyma.11G015900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1111088-1113087 Glycine max
Glyma.11G015900 2.0kb downstream 2.0kb downstream 6835 true Chr11: 1113088-1119922 Glycine max
Glyma.11G015900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1117923-1119922 Glycine max
Glyma.11G015900 5.0kb upstream 5.0kb upstream 9835 true Chr11: 1108088-1117922 Glycine max
Glyma.11G015900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1108088-1113087 Glycine max
Glyma.11G015900 5.0kb downstream 5.0kb downstream 9835 true Chr11: 1113088-1122922 Glycine max
Glyma.11G015900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1117923-1122922 Glycine max
Glyma.11G015900 10.0kb upstream 10.0kb upstream 14835 true Chr11: 1103088-1117922 Glycine max
Glyma.11G015900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1103088-1113087 Glycine max
Glyma.11G015900 10.0kb downstream 10.0kb downstream 14835 true Chr11: 1113088-1127922 Glycine max
Glyma.11G015900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1117923-1127922 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309732 5265 Fabidae View MSA
124062685 5270 Rosid View MSA
123737559 5271 Pentapetalae View MSA
122790815 5272 Eudicot View MSA
122045180 5273 Angiosperm View MSA
121346491 5274 Embryophyte View MSA
123424372 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.5997 0.0 83.7082 High High
cufflinks 13.0062 0.0 45.83    
cufflinks 10.8452 0.0 38.3038    
cufflinks 11.0428 0.0 38.9283    
cufflinks 14.7391 0.0 50.6567    
cufflinks 11.9267 0.0 41.6874    
cufflinks 16.2413 0.0 55.7685    
cufflinks 10.5664 0.0 37.8302    
cufflinks 17.0562 0.0 58.2875    
cufflinks 1.492       Low
cufflinks 1.63       Low
cufflinks 2.567        
cufflinks 3.132        
cufflinks 4.068       High
cufflinks 3.445       High
cufflinks 2.51        
cufflinks 1.213       Low
cufflinks 2.142        
cufflinks 2.76        
cufflinks 2.958        
cufflinks 1.997        
cufflinks 2.779        
cufflinks 2.736        
cufflinks 1.754        
cufflinks 2.926        
cufflinks 1.442       Low

0 Strain