Gene : Glyma.11G054500 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR10509//PTHR10509:SF23 - O-METHYLTRANSFERASE-RELATED Genomic Order:  545
Name:  ? Glyma.11G054500 Secondary Identifier:  ? PAC:30530148
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1121 Glycine max pathologic  
Gmax PWY-361 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G054500 0.5kb upstream 0.5kb upstream 3320 true Chr11: 4104145-4107464 Glycine max
Glyma.11G054500 0.5kb upstream 0.5kb upstream 500 false Chr11: 4106965-4107464 Glycine max
Glyma.11G054500 0.5kb downstream 0.5kb downstream 3320 true Chr11: 4103645-4106964 Glycine max
Glyma.11G054500 0.5kb downstream 0.5kb downstream 500 false Chr11: 4103645-4104144 Glycine max
Glyma.11G054500 1.0kb upstream 1.0kb upstream 3820 true Chr11: 4104145-4107964 Glycine max
Glyma.11G054500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 4106965-4107964 Glycine max
Glyma.11G054500 1.0kb downstream 1.0kb downstream 3820 true Chr11: 4103145-4106964 Glycine max
Glyma.11G054500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 4103145-4104144 Glycine max
Glyma.11G054500 2.0kb upstream 2.0kb upstream 4820 true Chr11: 4104145-4108964 Glycine max
Glyma.11G054500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 4106965-4108964 Glycine max
Glyma.11G054500 2.0kb downstream 2.0kb downstream 4820 true Chr11: 4102145-4106964 Glycine max
Glyma.11G054500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 4102145-4104144 Glycine max
Glyma.11G054500 5.0kb upstream 5.0kb upstream 7820 true Chr11: 4104145-4111964 Glycine max
Glyma.11G054500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 4106965-4111964 Glycine max
Glyma.11G054500 5.0kb downstream 5.0kb downstream 7820 true Chr11: 4099145-4106964 Glycine max
Glyma.11G054500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 4099145-4104144 Glycine max
Glyma.11G054500 10.0kb upstream 10.0kb upstream 12820 true Chr11: 4104145-4116964 Glycine max
Glyma.11G054500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 4106965-4116964 Glycine max
Glyma.11G054500 10.0kb downstream 10.0kb downstream 12820 true Chr11: 4094145-4106964 Glycine max
Glyma.11G054500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 4094145-4104144 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298243 5265 Fabidae View MSA
124036377 5270 Rosid View MSA
123609732 5271 Pentapetalae View MSA
122644374 5272 Eudicot View MSA
122043643 5273 Angiosperm View MSA
121346702 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0481112 0.0 0.210796 Low Low
cufflinks 0.266208 0.0 1.0411    
cufflinks 1.93479 0.0 11.2614    
cufflinks 25.1084 0.0 87.2866 High  
cufflinks 22.451 0.0 78.824 High  
cufflinks 876.333 0.0 10336.0 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.34961 0.0 6.07045    
cufflinks 44.1711 0.0 153.83 High  
cufflinks 0.083     Low  
cufflinks 0.644        
cufflinks 0.534        
cufflinks 7.991     High High
cufflinks 0.545        
cufflinks 0.503        
cufflinks 0.009     Low Low
cufflinks 4.467       High
cufflinks 1.423        
cufflinks 0.161        
cufflinks 0.003     Low Low
cufflinks 2.109        
cufflinks 0.014     Low Low
cufflinks 0.049     Low  
cufflinks 0.803        
cufflinks 0.009     Low Low
cufflinks 4.621       High

0 Strain