Gene : Glyma.11G043400 G. max Wm82.a2.v1
Defline:  (1 of 13) PF02517 - CAAX protease self-immunity (Abi) Genomic Order:  434
Name:  ? Glyma.11G043400 Secondary Identifier:  ? PAC:30530193
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G043400 0.5kb upstream 0.5kb upstream 4006 true Chr11: 3194952-3198957 Glycine max
Glyma.11G043400 0.5kb upstream 0.5kb upstream 500 false Chr11: 3198458-3198957 Glycine max
Glyma.11G043400 0.5kb downstream 0.5kb downstream 4006 true Chr11: 3194452-3198457 Glycine max
Glyma.11G043400 0.5kb downstream 0.5kb downstream 500 false Chr11: 3194452-3194951 Glycine max
Glyma.11G043400 1.0kb upstream 1.0kb upstream 4506 true Chr11: 3194952-3199457 Glycine max
Glyma.11G043400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3198458-3199457 Glycine max
Glyma.11G043400 1.0kb downstream 1.0kb downstream 4506 true Chr11: 3193952-3198457 Glycine max
Glyma.11G043400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3193952-3194951 Glycine max
Glyma.11G043400 2.0kb upstream 2.0kb upstream 5506 true Chr11: 3194952-3200457 Glycine max
Glyma.11G043400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3198458-3200457 Glycine max
Glyma.11G043400 2.0kb downstream 2.0kb downstream 5506 true Chr11: 3192952-3198457 Glycine max
Glyma.11G043400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3192952-3194951 Glycine max
Glyma.11G043400 5.0kb upstream 5.0kb upstream 8506 true Chr11: 3194952-3203457 Glycine max
Glyma.11G043400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3198458-3203457 Glycine max
Glyma.11G043400 5.0kb downstream 5.0kb downstream 8506 true Chr11: 3189952-3198457 Glycine max
Glyma.11G043400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3189952-3194951 Glycine max
Glyma.11G043400 10.0kb upstream 10.0kb upstream 13506 true Chr11: 3194952-3208457 Glycine max
Glyma.11G043400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3198458-3208457 Glycine max
Glyma.11G043400 10.0kb downstream 10.0kb downstream 13506 true Chr11: 3184952-3198457 Glycine max
Glyma.11G043400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3184952-3194951 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307678 5265 Fabidae View MSA
124067074 5270 Rosid View MSA
123746065 5271 Pentapetalae View MSA
122791545 5272 Eudicot View MSA
122045418 5273 Angiosperm View MSA
121347772 5274 Embryophyte View MSA
123380622 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 160.545 0.0 519.532 High High
cufflinks 51.2565 0.0 140.821 High  
cufflinks 73.6167 0.0 210.153 High  
cufflinks 37.4771 0.0 101.017 High  
cufflinks 9.39838 0.0 26.1816   Low
cufflinks 20.0068 0.0 53.4612    
cufflinks 17.1265 0.0 45.9671    
cufflinks 47.8261 0.0 130.763 High  
cufflinks 7.15622 0.0 20.5464   Low
cufflinks 18.389     High  
cufflinks 2.25        
cufflinks 28.828     High  
cufflinks 2.852        
cufflinks 0.702       Low
cufflinks 3.155        
cufflinks 52.293     High High
cufflinks 2.546        
cufflinks 18.608     High  
cufflinks 25.945     High  
cufflinks 72.999     High High
cufflinks 2.007        
cufflinks 72.093     High High
cufflinks 36.806     High  
cufflinks 1.428       Low
cufflinks 65.071     High High
cufflinks 1.817       Low

0 Strain