Gene : Glyma.11G065500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11946:SF53 - TYROSINE-TRNA LIGASE Genomic Order:  655
Name:  ? Glyma.11G065500 Secondary Identifier:  ? PAC:30529290
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G065500 0.5kb upstream 0.5kb upstream 3942 true Chr11: 4945511-4949452 Glycine max
Glyma.11G065500 0.5kb upstream 0.5kb upstream 500 false Chr11: 4948953-4949452 Glycine max
Glyma.11G065500 0.5kb downstream 0.5kb downstream 3942 true Chr11: 4945011-4948952 Glycine max
Glyma.11G065500 0.5kb downstream 0.5kb downstream 500 false Chr11: 4945011-4945510 Glycine max
Glyma.11G065500 1.0kb upstream 1.0kb upstream 4442 true Chr11: 4945511-4949952 Glycine max
Glyma.11G065500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 4948953-4949952 Glycine max
Glyma.11G065500 1.0kb downstream 1.0kb downstream 4442 true Chr11: 4944511-4948952 Glycine max
Glyma.11G065500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 4944511-4945510 Glycine max
Glyma.11G065500 2.0kb upstream 2.0kb upstream 5442 true Chr11: 4945511-4950952 Glycine max
Glyma.11G065500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 4948953-4950952 Glycine max
Glyma.11G065500 2.0kb downstream 2.0kb downstream 5442 true Chr11: 4943511-4948952 Glycine max
Glyma.11G065500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 4943511-4945510 Glycine max
Glyma.11G065500 5.0kb upstream 5.0kb upstream 8442 true Chr11: 4945511-4953952 Glycine max
Glyma.11G065500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 4948953-4953952 Glycine max
Glyma.11G065500 5.0kb downstream 5.0kb downstream 8442 true Chr11: 4940511-4948952 Glycine max
Glyma.11G065500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 4940511-4945510 Glycine max
Glyma.11G065500 10.0kb upstream 10.0kb upstream 13442 true Chr11: 4945511-4958952 Glycine max
Glyma.11G065500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 4948953-4958952 Glycine max
Glyma.11G065500 10.0kb downstream 10.0kb downstream 13442 true Chr11: 4935511-4948952 Glycine max
Glyma.11G065500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 4935511-4945510 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041140 5273 Angiosperm View MSA
122246875 5265 Fabidae Singleton cluster - no MSA
123990762 5270 Rosid Singleton cluster - no MSA
123747436 5271 Pentapetalae View MSA
122790144 5272 Eudicot View MSA
121344192 5274 Embryophyte View MSA
123424631 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.7437 0.0 62.4649    
cufflinks 14.6261 0.0 48.76    
cufflinks 12.9445 0.0 44.2914   Low
cufflinks 16.6869 0.0 55.1514    
cufflinks 22.3524 0.0 74.0057 High High
cufflinks 24.4303 0.0 82.0134 High High
cufflinks 15.6233 0.0 52.4036    
cufflinks 12.8633 0.0 43.1557   Low
cufflinks 21.1016 0.0 70.0301 High  
cufflinks 4.024        
cufflinks 3.485       Low
cufflinks 5.003        
cufflinks 8.869     High High
cufflinks 7.984     High High
cufflinks 3.412       Low
cufflinks 5.198        
cufflinks 3.45       Low
cufflinks 5.143        
cufflinks 4.767        
cufflinks 5.059        
cufflinks 4.339        
cufflinks 4.903        
cufflinks 4.698        
cufflinks 4.009        
cufflinks 5.026        
cufflinks 4.875        

0 Strain