Gene : Glyma.11G069700 G. max Wm82.a2.v1
Defline:  (1 of 9) PF00415//PF13540 - Regulator of chromosome condensation (RCC1) repeat (RCC1) // Regulator of chromosome condensation (RCC1) repeat (RCC1_2) Genomic Order:  697
Name:  ? Glyma.11G069700 Secondary Identifier:  ? PAC:30527968
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G069700 0.5kb upstream 0.5kb upstream 2291 true Chr11: 5240442-5242732 Glycine max
Glyma.11G069700 0.5kb upstream 0.5kb upstream 500 false Chr11: 5242233-5242732 Glycine max
Glyma.11G069700 0.5kb downstream 0.5kb downstream 2291 true Chr11: 5239942-5242232 Glycine max
Glyma.11G069700 0.5kb downstream 0.5kb downstream 500 false Chr11: 5239942-5240441 Glycine max
Glyma.11G069700 1.0kb upstream 1.0kb upstream 2791 true Chr11: 5240442-5243232 Glycine max
Glyma.11G069700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 5242233-5243232 Glycine max
Glyma.11G069700 1.0kb downstream 1.0kb downstream 2791 true Chr11: 5239442-5242232 Glycine max
Glyma.11G069700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 5239442-5240441 Glycine max
Glyma.11G069700 2.0kb upstream 2.0kb upstream 3791 true Chr11: 5240442-5244232 Glycine max
Glyma.11G069700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 5242233-5244232 Glycine max
Glyma.11G069700 2.0kb downstream 2.0kb downstream 3791 true Chr11: 5238442-5242232 Glycine max
Glyma.11G069700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 5238442-5240441 Glycine max
Glyma.11G069700 5.0kb upstream 5.0kb upstream 6791 true Chr11: 5240442-5247232 Glycine max
Glyma.11G069700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 5242233-5247232 Glycine max
Glyma.11G069700 5.0kb downstream 5.0kb downstream 6791 true Chr11: 5235442-5242232 Glycine max
Glyma.11G069700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 5235442-5240441 Glycine max
Glyma.11G069700 10.0kb upstream 10.0kb upstream 11791 true Chr11: 5240442-5252232 Glycine max
Glyma.11G069700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 5242233-5252232 Glycine max
Glyma.11G069700 10.0kb downstream 10.0kb downstream 11791 true Chr11: 5230442-5242232 Glycine max
Glyma.11G069700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 5230442-5240441 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239055 5265 Fabidae Singleton cluster - no MSA
123984358 5270 Rosid Singleton cluster - no MSA
123559880 5271 Pentapetalae Singleton cluster - no MSA
122594684 5272 Eudicot Singleton cluster - no MSA
122049165 5273 Angiosperm View MSA
121344608 5274 Embryophyte View MSA
123428657 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.811264 0.0 3.03384   High
cufflinks 0.329383 0.0 1.28315    
cufflinks 0.310676 0.0 1.21253    
cufflinks 0.140228 0.0 0.563533 Low  
cufflinks 0.0627012 0.0 0.262395 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.2181 0.0 0.861234    
cufflinks 0.0503474 0.0 0.214691 Low Low
cufflinks 0.203741 0.0 0.807136 Low  
cufflinks 4.244       High
cufflinks 0.534        
cufflinks 3.075       High
cufflinks 0.453        
cufflinks 0.194       Low
cufflinks 0.788        
cufflinks 2.471        
cufflinks 1.47        
cufflinks 2.925       High
cufflinks 0.84        
cufflinks 1.487        
cufflinks 0.364       Low
cufflinks 1.829        
cufflinks 2.323        
cufflinks 0.198       Low
cufflinks 1.164        
cufflinks 1.076        

0 Strain