Gene : Glyma.11G107300 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATED Genomic Order:  1073
Name:  ? Glyma.11G107300 Secondary Identifier:  ? PAC:30529191
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G107300 0.5kb upstream 0.5kb upstream 6888 true Chr11: 8182039-8188926 Glycine max
Glyma.11G107300 0.5kb upstream 0.5kb upstream 500 false Chr11: 8188427-8188926 Glycine max
Glyma.11G107300 0.5kb downstream 0.5kb downstream 6888 true Chr11: 8181539-8188426 Glycine max
Glyma.11G107300 0.5kb downstream 0.5kb downstream 500 false Chr11: 8181539-8182038 Glycine max
Glyma.11G107300 1.0kb upstream 1.0kb upstream 7388 true Chr11: 8182039-8189426 Glycine max
Glyma.11G107300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 8188427-8189426 Glycine max
Glyma.11G107300 1.0kb downstream 1.0kb downstream 7388 true Chr11: 8181039-8188426 Glycine max
Glyma.11G107300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 8181039-8182038 Glycine max
Glyma.11G107300 2.0kb upstream 2.0kb upstream 8388 true Chr11: 8182039-8190426 Glycine max
Glyma.11G107300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 8188427-8190426 Glycine max
Glyma.11G107300 2.0kb downstream 2.0kb downstream 8388 true Chr11: 8180039-8188426 Glycine max
Glyma.11G107300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 8180039-8182038 Glycine max
Glyma.11G107300 5.0kb upstream 5.0kb upstream 11388 true Chr11: 8182039-8193426 Glycine max
Glyma.11G107300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 8188427-8193426 Glycine max
Glyma.11G107300 5.0kb downstream 5.0kb downstream 11388 true Chr11: 8177039-8188426 Glycine max
Glyma.11G107300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 8177039-8182038 Glycine max
Glyma.11G107300 10.0kb upstream 10.0kb upstream 16388 true Chr11: 8182039-8198426 Glycine max
Glyma.11G107300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 8188427-8198426 Glycine max
Glyma.11G107300 10.0kb downstream 10.0kb downstream 16388 true Chr11: 8172039-8188426 Glycine max
Glyma.11G107300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 8172039-8182038 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299475 5265 Fabidae View MSA
124069636 5270 Rosid View MSA
123744925 5271 Pentapetalae View MSA
122791810 5272 Eudicot View MSA
122043926 5273 Angiosperm View MSA
123429031 5275 Viridiplantae View MSA
121346982 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.54825 0.0 21.0242   Low
cufflinks 18.7901 0.0 56.3887    
cufflinks 18.4759 0.0 55.5257    
cufflinks 28.3454 0.0 89.0008 High  
cufflinks 24.7538 0.0 76.2141 High  
cufflinks 28.4765 0.0 89.4362 High  
cufflinks 25.1227 0.0 77.4563 High  
cufflinks 32.5281 0.0 104.816 High  
cufflinks 23.4331 0.0 71.9783 High  
cufflinks 16.863     High High
cufflinks 9.497     High  
cufflinks 10.198     High  
cufflinks 13.132     High  
cufflinks 12.575     High  
cufflinks 16.527     High High
cufflinks 8.121     High  
cufflinks 11.655     High  
cufflinks 15.193     High High
cufflinks 7.187        
cufflinks 5.572       Low
cufflinks 13.396     High  
cufflinks 5.713       Low
cufflinks 5.035       Low
cufflinks 7.748     High  
cufflinks 6.403       Low
cufflinks 13.359     High  

0 Strain