Gene : Glyma.11G086200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10553//PTHR10553:SF9 - SMALL NUCLEAR RIBONUCLEOPROTEIN Genomic Order:  862
Name:  ? Glyma.11G086200 Secondary Identifier:  ? PAC:30531334
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G086200 0.5kb upstream 0.5kb upstream 1912 true Chr11: 6484259-6486170 Glycine max
Glyma.11G086200 0.5kb upstream 0.5kb upstream 500 false Chr11: 6484259-6484758 Glycine max
Glyma.11G086200 0.5kb downstream 0.5kb downstream 1912 true Chr11: 6484759-6486670 Glycine max
Glyma.11G086200 0.5kb downstream 0.5kb downstream 500 false Chr11: 6486171-6486670 Glycine max
Glyma.11G086200 1.0kb upstream 1.0kb upstream 2412 true Chr11: 6483759-6486170 Glycine max
Glyma.11G086200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 6483759-6484758 Glycine max
Glyma.11G086200 1.0kb downstream 1.0kb downstream 2412 true Chr11: 6484759-6487170 Glycine max
Glyma.11G086200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 6486171-6487170 Glycine max
Glyma.11G086200 2.0kb upstream 2.0kb upstream 3412 true Chr11: 6482759-6486170 Glycine max
Glyma.11G086200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 6482759-6484758 Glycine max
Glyma.11G086200 2.0kb downstream 2.0kb downstream 3412 true Chr11: 6484759-6488170 Glycine max
Glyma.11G086200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 6486171-6488170 Glycine max
Glyma.11G086200 5.0kb upstream 5.0kb upstream 6412 true Chr11: 6479759-6486170 Glycine max
Glyma.11G086200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 6479759-6484758 Glycine max
Glyma.11G086200 5.0kb downstream 5.0kb downstream 6412 true Chr11: 6484759-6491170 Glycine max
Glyma.11G086200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 6486171-6491170 Glycine max
Glyma.11G086200 10.0kb upstream 10.0kb upstream 11412 true Chr11: 6474759-6486170 Glycine max
Glyma.11G086200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 6474759-6484758 Glycine max
Glyma.11G086200 10.0kb downstream 10.0kb downstream 11412 true Chr11: 6484759-6496170 Glycine max
Glyma.11G086200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 6486171-6496170 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122246629 5265 Fabidae Singleton cluster - no MSA
123990560 5270 Rosid Singleton cluster - no MSA
123565578 5271 Pentapetalae Singleton cluster - no MSA
122600343 5272 Eudicot Singleton cluster - no MSA
122043124 5273 Angiosperm View MSA
121347194 5274 Embryophyte View MSA
123426460 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.8432 0.0 48.3166   Low
cufflinks 63.5642 0.0 169.768 High High
cufflinks 20.6041 0.0 57.5972 High Low
cufflinks 24.4143 0.0 67.2473 High  
cufflinks 51.7619 0.0 138.122 High  
cufflinks 50.6829 0.0 135.267 High  
cufflinks 49.0436 0.0 130.948 High  
cufflinks 37.6667 0.0 101.183 High  
cufflinks 51.888 0.0 138.445 High  
cufflinks 13.035     High  
cufflinks 7.587     High Low
cufflinks 15.275     High  
cufflinks 26.341     High High
cufflinks 33.285     High High
cufflinks 7.721     High Low
cufflinks 17.293     High  
cufflinks 14.523     High  
cufflinks 19.251     High  
cufflinks 23.298     High High
cufflinks 14.103     High  
cufflinks 9.439     High Low
cufflinks 15.68     High  
cufflinks 18.362     High  
cufflinks 9.127     High Low
cufflinks 17.194     High  
cufflinks 11.968     High  

0 Strain